Release 56
(Apr 24, 2025)

This linkage-map based data has been obsolete
(see Release notes 51, 52, 53). Information
provided here is only for retrospective online
support of publications that used this data.

QTL 65890 Description:

 Trait Information
Trait name: Ham weight Vertebrate Trait Ontology: Hindlimb mass
Reported name: (n/a) Product Trait Ontology: Ham weight
Symbol: HAMWT Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:3
QTL Peak Location:8.4 (cM)
QTL Span:5.22-5.31 (cM)
8.9-8.9 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":rs196953379
Peak:
Lower, "Significant":rs196956298
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:QTL
Model tested:Mendelian
Test base:Experiment-wise
Threshold significance level:Significant
F_Stat7.83
VARIANCE4.07
P_values0.0056
Dominance effect:n/a
Additive effect:n/a
Associated Gene:SERPINE1 (serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 )
Cis/Trans acting type:
Links:   NCBI GeneDB  |  Edit  |   Map view

 Extended information:
(none)

User inputs on QTL #65890
  • Add your annotations
  • Add your comments
  • Report problems
    •  QTL Experiment in Brief
    Animals:Animals were from a Meishan x Large White cross population and a European wild boar x Meishan F2 population.
     Breeds associated:
    Design:Animals were genotyped for two SNPs in SERPINE1 and analyzed for growth, carcass, and meat quality traits.
    Analysis:The general linear model procedure was used.
    Software:SAS
    Notes: 
    Links:Edit

     Reference
    Authors:Weisz F, Bartenschlager H, Knoll A, Mileham A, Deeb N, Geldermann H, Cepica S
    Affiliation:Institute of Animal Physiology and Genetics, Academy of Sciences of Czech Republic, Liběchov, Czech Republic
    Title:Association analyses of porcine SERPINE1 reveal sex-specific effects on muscling, growth, fat accretion and meat quality
    Journal:Animal genetics, 2012, 43(5): 614-9
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  
    User inputs on reference #22497544
  • Add your comments
  • Note similar findings
  • Note contradictions
    • Cite this Data:

    Animal QTLdb: QTL65890 was published in 2012, and was curated into QTLdb on 2016-02-02. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:65890

     

    © 2003-2025: USA · USDA · NRPSP8 · Program to Accelerate Animal Genomics Applications. Contact: Bioinformatics Team