| QTL Map Information |
|---|
| Chromosome: | 15 |
| QTL Peak Location: | 93.64 (cM) |
| QTL Span: | 93.64-93.64 (cM)
104.6-104.6 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs81454185 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 6.77E-13 | | Dominance effect: | n/a |
| Additive effect: | -0.33 |
| Associated Gene: | NIF3L1 (NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)) |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were F2 White Duroc x Erhualian or Chinese Sutai pigs. |
| Breeds associated:
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| Design: | F2 and Sutai animals were genotyped using the Illumina PorcineSNP60 BeadChip. F2 pigs were also genotyped for 194 microsatellite markers. Association with skin thickness was analyzed. |
| Analysis: | Both linkage analysis and genome-wide association analysis were performed. |
| Software: | CRIMAP, S.A.G.E., QTL Express, R software, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Ai H, Xiao S, Zhang Z, Yang B, Li L, Guo Y, Lin G, Ren J, Huang L |
| Affiliation: | Key Laboratory for Animal Biotechnology of Jiangxi Province and the Ministry of Agriculture of China, Jiangxi Agricultural University, 330045, Nanchang, China |
| Title: | Three novel quantitative trait loci for skin thickness in swine identified by linkage and genome-wide association studies |
| Journal: | Animal genetics, 2014, 45(4): 524-33 |
| Links: |
PubMed | Abstract | List all data
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