Release 56
(Apr 24, 2025)

This linkage-map based data has been obsolete
(see Release notes 51, 52, 53). Information
provided here is only for retrospective online
support of publications that used this data.

QTL 3096 Description:

 Trait Information
Trait name: Intramuscular fat content Vertebrate Trait Ontology: Intramuscular adipose amount
Reported name: Intramuscular fat content Product Trait Ontology: Intramuscular fat content
Symbol: IMF Clinical Measurement Ontology: Intramuscular fat morphological measurement
 QTL Map Information
Chromosome:7
QTL Peak Location:113.4 (cM)
QTL Span:109.5-117.3 (cM)
106.8-112.6 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":SW1083
Peak:
Lower, "Significant":SWR773
Lower, "Suggestive":n/a
Marker type:Microsatellites
Analysis type:QTL
Model tested:n/a
Test base:n/a
Threshold significance level:n/a
P_values<0.01
Dominance effect:n/a
Additive effect:n/a
Associated Gene:n/a
Cis/Trans acting type:
Links:   NCBI GeneDB  |  Edit  |   Map view

 Extended information:
(none)

User inputs on QTL #3096
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  •  QTL Experiment in Brief
    Animals:A resource population comprising of 865 F2 animals produced from the cross of a Meishan sow and a Duroc boar was used.
     Breeds associated:
    n/a
    Design:IMF content was measured and used to localize the IMF QTL on the linkage map.
    Analysis:The QTL for IMF was analyzed using the method developed by Haley et al (1994). The F-value was used as a test statistic for detecting QTL , and a chromosome-wise threshold was obtained by permutation of 5000 repetitions.
    Software:CRI-Map 2.4
    Notes: 
    Links:Edit

     Reference
    Authors:S. Sato, H. Hasebe, S. Sato, Y. Asahi, T. Hayashi, E. Kobayashi, Y. Sugimoto
    Affiliation:National Livestock Breeding Center, Nishigo, Japan; National Institute of Agrobiological Sciences, Tsukuba, Japan; Shirakawa Institute of Animal Genetics, Nishigo, Japan
    Title:High-resolution physical mapping and construction of a porcine contig spanning the intramuscular fat content QTL
    Journal:Animal Genetics, 2005, 37: 113-120
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  
    User inputs on reference #16573525
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  • Cite this Data:

    Animal QTLdb: QTL3096 was published in 2005, and was curated into QTLdb on 2006-12-27. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:3096

     

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