Release 56
(Apr 24, 2025)

QTL 18531 Description:

 Trait Information
Trait name: Longissimus muscle depth Vertebrate Trait Ontology: Longissimus thoracis muscle thickness
Reported name: Loin muscle depth Product Trait Ontology: n/a
Symbol: LMDEP Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:9
QTL Peak Location:10.8 (cM)
QTL Span:9.57-9.63 (cM)
9.6-9.7 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:
Analysis type:Association
Model tested:Mendelian
Test base:n/a
Threshold significance level:Significant
P_values<0.01
Dominance effect:-0.206
Additive effect:0.413
Associated Gene:INPPL1 (inositol polyphosphate phosphatase-like 1)
Cis/Trans acting type:
Links:   NCBI GeneDB  |  Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were from a Large White x Meishan F2 resource population.
     Breeds associated:
    Design:Animals were genotyped for a SNP in SHIP2 (INPPL1) and analyzed for growth and meat quality traits.
    Analysis:The least-squares method the the general linear model procedure was used.
    Software:SAS
    Notes: 
    Links:Edit

     Reference
    Authors:Xiong Q, Chai J, Deng C, Jiang S, Li X, Suo X, Zhang N, Yang Q, Liu Y, Zheng R, Chen M
    Affiliation:Hubei Key Laboratory of Animal Embryo Engineering and Molecular Breeding, Institute of Animal Husbandry and Veterinary, Hubei Academy of Agricultural Sciences, Wuhan, China.
    Title:Molecular characterization, expression pattern, and association analysis with carcass traits of the porcine SHIP2 gene
    Journal:Mol Cell Biochem, 2012, 360(1-2):225-33
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  
    User inputs on reference #21935613
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  • Cite this Data:

    Animal QTLdb: QTL18531 was published in 2012, and was curated into QTLdb on 2012-11-14. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:18531

     

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