Release 56
(Apr 24, 2025)

This linkage-map based data has been obsolete
(see Release notes 51, 52, 53). Information
provided here is only for retrospective online
support of publications that used this data.

QTL 17796 Description:

 Trait Information
Trait name: Subcutaneous fat thickness Vertebrate Trait Ontology: Subcutaneous adipose thickness
Trait details: fat depth, back last rib, F.O.M, Product Trait Ontology: n/a
Symbol: LRIBF Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:5
QTL Peak Location:129.2 (cM)
QTL Span:118.7-134.4 (cM)
85.8-99.6 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":IGF1
Peak:
Lower, "Significant":SW378
Lower, "Suggestive":n/a
Marker type:Microsatellites
Analysis type:QTL
Model tested:Mendelian
Test base:Genome-wise
Threshold significance level:Significant
LikelihoodR18.2
VARIANCE17.6
P_values<0.01
Dominance effect:n/a
Additive effect:n/a
Associated Gene:n/a
Cis/Trans acting type:
Links:   Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were from an F2 population from an intercross between FH016 (Pietrain type) and FH019 (synthetic line from Duroc, Hampshire, and Large White founders) production sire lines.
     Breeds associated:
    Design:Animals were genotyped for 170 microsatellite markers and two polymorphisms and analyzed for meat quality, carcass composition, and growth traits.
    Analysis:QTL detection was performed using a two-step variance component estimation method.
    Software:CRIMAP, LOKI, ASREML
    Notes: 
    Links:Edit

     Reference
    Authors:Cherel P, Pires J, Glenisson J, Milan D, Iannuccelli N, Herault F, Damon M, Le Roy P
    Affiliation:INRA, UMR0598, Genetique Animale, 35042 Rennes cedex, France.
    Title:Joint analysis of quantitative trait loci and major-effect causative mutations affecting meat quality and carcass composition traits in pigs.
    Journal:BMC genetics, 2011, 12:76
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  
    User inputs on reference #21875434
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  • Cite this Data:

    Animal QTLdb: QTL17796 was published in 2011, and was curated into QTLdb on 2012-08-20. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:17796

     

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