Release 56
(Apr 24, 2025)

QTL 17582 Description:

 Trait Information
Trait name: Subcutaneous fat thickness Vertebrate Trait Ontology: Subcutaneous adipose thickness
Trait details: average backfat thickness Product Trait Ontology: n/a
Symbol: BFT Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:2
QTL Peak Location:3 (cM)
QTL Span:3.85-3.93 (cM)
5.2-5.3 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:-
Analysis type:Association
Model tested:Mendelian
Test base:-
Threshold significance level:Significant
P_values0.046
Dominance effect:n/a
Additive effect:n/a
Associated Gene:KDM2A (lysine (K)-specific demethylase 2A)
Cis/Trans acting type:
Links:   Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Pigs were from either a Berkshire x Yorkshire resource family or an experimental population consisting of Tongcheng, Swedish Landrace, Large White, and crossbreds of Large White x (Landrace x Tongcheng ) and Landrace x (Large White x Tongcheng).
     Breeds associated:
    n/a
    Design:Pigs were genotyped for one SNP in JHDM1A (KDM2A) and analyzed for growth, carcass, and meat quality traits.
    Analysis:The general linear model procedure was used.
    Software:CRIMAP, SAS
    Notes: 
    Links:Edit

     Reference
    Authors:Peng YB, Fan B, Han XL, Xu XW, Rothschild MF, Yerle M, Liu B
    Affiliation:Lab of Molecular Biology and Animal Breeding, Key Lab of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China
    Title:Molecular characterization of the porcine JHDM1A gene associated with average daily gain: evaluation its role in skeletal muscle development and growth
    Journal:Mol Biol Rep, 2011, 38(7):4697-704
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  

     Additional Information
    Comments:C224G
    User inputs on reference #21127984
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  • Cite this Data:

    Animal QTLdb: QTL17582 was published in 2011, and was curated into QTLdb on 2012-07-31. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:17582

     

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