| QTL Map Information |
|---|
| Chromosome: | 2 |
| QTL Peak Location: | 83.99 (cM) |
| QTL Span: | 83.99-83.99 (cM)
103.3-103.3 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs196953701 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
P_values | 0.00027 | | Dominance effect: | n/a |
| Additive effect: | 0.3271 |
| Associated Gene: | CAST (calpastatin) |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were from a Duroc-Yorkshire-Landrace composite population and an F2 Duroc-Landrace population. Samples analyzed for meat quality traits were Ohio State University National Pork Board Industry samples and Babcock Genetics Industry samples. |
| Breeds associated:
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| Design: | Samples were genotyped for 131 SNP markers and analyzed for tenderness, taste panel, meat quality, and/or fatness traits. |
| Analysis: | The QTL Association option of Mendel and PROC MIXED were used. |
| Software: | Mendel, SAS, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Nonneman D, Lindholm-Perry AK, Shackelford SD, King DA, Wheeler TL, Rohrer GA, Bierman CD, Schneider JF, Miller RK, Zerby H, Moe |
| Affiliation: | US Meat Animal Research Center, Clay Center, NE 68933, USA |
| Title: | Predictive markers in calpastatin for tenderness in commercial pig populations. |
| Journal: | Journal of animal science, 2011, 89(9):2663-72 |
| Links: |
PubMed | Abstract | List all data
| Edit |
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