| QTL Map Information |
|---|
| Chromosome: | 14 |
| QTL Peak Location: | 33.78 (cM) |
| QTL Span: | 33.78-33.78 (cM)
47.7-47.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs80951104 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 8.1% | | P_values | 7.43E-5 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Landrace pigs. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for umbilical hernia occurrence. A total of 49,049 SNPs were used for analysis. Pigs were also genotyped for 46 SNPs in different candidate genes. |
| Analysis: | The structured association approach (qtscore) for binary traits was used. |
| Software: | Beagle, Haploview, GenABEL in R, ASReml |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Grindflek E, Hansen M H S, Lien S, van Son M |
| Affiliation: | Norsvin SA, Storhamargata 44, 2317, Hamar, Norway |
| Title: | Genome-wide association study reveals a QTL and strong candidate genes for umbilical hernia in pigs on SSC14 |
| Journal: | BMC genomics, 2018, 19(1): 412 |
| Links: |
PubMed | Abstract | List all data
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