| QTL Map Information |
|---|
| Chromosome: | 14 |
| QTL Peak Location: | 91.65 (cM) |
| QTL Span: | 91.61-91.69 (cM)
118.8-118.9 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs81449705 |
| Peak: | |
| Lower, "Significant": | rs81300977 |
| Lower, "Suggestive": | n/a |
| Marker type: | CNV |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
P_values | 4.20E-2 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were purebred Duroc, Landrace, and Yorkshire pigs. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip, and CNVs were detected and analyzed for association with umbilical hernia. |
| Analysis: | GWAS was performed using a case-control study. |
| Software: | FASTPHASE, PENNCNV, PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Long Y, Su Y, Ai H, Zhang Z, Yang B, Ruan G, Xiao S, Liao X, Ren J, Huang L, Ding N |
| Affiliation: | State Key Laboratory of Pig Genetic Improvement and Production Technology, Jiangxi Agricultural University, Nanchang, 330045, China |
| Title: | A genome-wide association study of copy number variations with umbilical hernia in swine |
| Journal: | Animal genetics, 2016, 47(3): 298-305 |
| Links: |
PubMed | Abstract | List all data
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