QTLdb: entrichment tests

Release 56
(Apr 24, 2025)

Whole genome analysis for QTL/association enrichment

Running...

Version: Enrich S: beta v0.8

Data:

Number of flavor traits:	16
Number of QTL / associations found:	124
Number of chromosomes where QTL / associations are found:	19

Chi-squared (χ²) test: are flavor traits over-represented on some chromosomes?

Chromosomes	Total χ²	df	p-values	FDR ^*	Size of χ²
Chromosome X	50.22752	18	6.972923e-05	1.204414e-04
Chromosome 1	30.48560	18	0.03298456	4.820820e-02
Chromosome 2	3085.06624	18	9e-41	1.710000e-39
Chromosome 3	15.64688	18	0.6171766	6.897856e-01
Chromosome 4	30.48560	18	0.03298456	4.820820e-02
Chromosome 5	15.64688	18	0.6171766	6.897856e-01
Chromosome 6	136.93712	18	2.488497e-20	2.364072e-19
Chromosome 7	50.22752	18	6.972923e-05	1.204414e-04
Chromosome 8	74.87264	18	6.655136e-09	3.161190e-08
Chromosome 9	0.67904	18	0.998329325823115	9.983293e-01
Chromosome 10	50.22752	18	6.972923e-05	1.204414e-04
Chromosome 11	50.22752	18	6.972923e-05	1.204414e-04
Chromosome 12	15.64688	18	0.6171766	6.897856e-01
Chromosome 13	73.45328	18	1.166763e-08	4.433699e-08
Chromosome 14	29.58240	18	0.04170971	5.660603e-02
Chromosome 15	5.32432	18	0.998258	9.983293e-01
Chromosome 16	50.22752	18	6.972923e-05	1.204414e-04
Chromosome 17	50.22752	18	6.972923e-05	1.204414e-04
Chromosome 18	74.87264	18	6.655136e-09	3.161190e-08

Chi-squared (χ²) test: Which of the 16 flavor traits are over-represented in the QTLdb

Traits	Total χ²	df	p-values	FDR ^*	Size of χ²
Acid flavor	4.64289	15	0.9947425	0.994742500
Flavor score	9.42675	15	0.8541686	0.982232229
Juiciness score	18.59039	15	0.2328989	0.372638240
Off-flavor score	31.48212	15	0.007567472	0.040359851
Oiliness	26.68335	15	0.03142474	0.084201851
Overall impression, sensory panel	19.73159	15	0.1824728	0.364945600
Subjective abnormal flavor in fat	30	15	0.01192150	0.047686000
Subjective abnormal flavor in lean	9.33334	15	0.8594532	0.982232229
Subjective boar flavor in fat	11.4	15	0.7237581	0.965010800
Subjective boar flavor in lean	26.1143	15	0.03683831	0.084201851
Subjective pork flavor in fat	7.85715	15	0.9293819	0.991340693
Subjective pork flavor in lean	19.02858	15	0.2124417	0.372638240
Taste intensity	34.16669	15	0.003226502	0.025812016
Umami flavor intensity	44.28889	15	9.907709e-05	0.001585233
androstenone, sensory panel	26.48334	15	0.03323899	0.084201851
skatole, sensory panel	15.48956	15	0.4167614	0.606198400

Correlations found between some of these traits for your reference

No correlation data found on these traits

Overall Test

Data		Chi'Square Test			Fisher's Exact Test
Number of chrom.:	19	χ²	=	3890.064640
Number of traits:	16	df	=	270
Number of QTLs:	124	p-value	=	0

FOOT NOTE: * : FDR is short for "false discovery rate", representing the expected proportion of type I errors. A type I error is where you incorrectly reject the null hypothesis, i.e. you get a false positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where V = Number of Type I errors (false positives); R = Number of rejected hypotheses. Benjamini–Hochberg procedure is a practical way to estimate FDR.

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