QTL #19866 Description:

 Trait Information
Trait name: Plasma cortisol level after confinement Vertebrate Trait Ontology: Blood cortisol amount
Reported name: Product Trait Ontology: n/a
Symbol: PLASCC Clinical Measurement Ontology: Plasma cortisol level
 QTL Map Information
Chromosome:1
QTL Peak Location:n/a
QTL Span:80.6-103.1 (cM)
- (Mbp)
Upper, "Suggestive":OMM1082
Upper, "Significant":n/a
Peak:
Lower, "Significant":n/a
Lower, "Suggestive":OMM1355
Marker type:Microsatellite
Analysis type:QTL
Model tested:-
Test base:Experiment-wise
Threshold significance level:Suggestive
LOD_score2.3
LikelihoodR10.8
F_Stat5.51
VARIANCE0.08
Dominance effect:n/a
Additive effect:n/a
Associated Gene:n/a
Links:   Edit  |   Map view

 Extended information:
(none)

User inputs on QTL #19866
  • Add your annotations
  • Add your comments
  • Report problems
  •  QTL Experiment in Brief
    Animals:Two QTL mapping F2 families (2008052 and 2008160) with their corresponding F1 parents and P1 grandparents were used in the current genome scan. Each family had two grandparents (P1 generation), two parents (F1 generation), and 230 and 228 F2 offsprin
     Breeds associated:
    n/a
    Design:There were two QTL mapping F2 families (2008052 and 2008160). Each of the P1, F1 and F2 animals had four repeated measurements of plasma cortisol (cort1, cort2, cort3 and cort4) recorded at about 4-week intervals. Estimated animal breeding value (EBV) was calculated for each individual using the four repeated measurements of plasma cortisol and fitting a mixed inheritance linear model under a Bayesian framework with software iBay version 1.46. An index BLUP was calculated that weighted repeated measurements
    Analysis:Using software GridQTL, regression interval mapping was performed using both the TREE and F2 modules.
    Software:GridQTL
    Notes: 
    Links:Edit
     Reference
    Authors:Caird E. Rexroad, Roger L. Vallejo, Sixin Liu, Yniv Palti and Gregory M. Weber
    Affiliation:NCCCWA/USDA-ARS
    Title:Quantitative Trait Loci Affecting Response to Crowding Stress in an F2 Generation of Rainbow Trout Produced through Phenotypic Selection
    Journal:Marine Biotechnology, 2013,
    Links:  No PubMed entry  |  Abstract   |  List all QTL   |  Edit  

     Additional Information
    Comments:population 2008052, EBV, F2 module
    User inputs on reference #ISU0065
  • Add your comments
  • Note similar findings
  • Note contradictions

  • Web Access Statistics © 2003-2020 NAGRP - Bioinformatics Coordination Program.
    Contact: NAGRP Bioinformatics Team
    Helpdesk