QTL #17146 Description:

 Trait Information
Trait name: Plasma cortisol level after confinement Vertebrate Trait Ontology: Blood cortisol amount
Reported name: Product Trait Ontology: n/a
Symbol: PLASCC Clinical Measurement Ontology: Plasma cortisol level
 QTL Map Information
Chromosome:19
QTL Peak Location:n/a
QTL Span:114.6-125.7 (cM)
- (Mbp)
Upper, "Suggestive":OMM1241
Upper, "Significant":n/a
Peak:
Lower, "Significant":n/a
Lower, "Suggestive":OMM3067
Analysis type:QTL
Model tested:-
Test base:Chromosome-wise
Threshold significance level:Suggestive
LikelihoodR14.59
VARIANCE0.18
P_valuesn/a
LOD_scoren/a
LS_meann/a
Dominance effect:n/a
Additive effect:n/a
Associated Gene:n/a
Links:   Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Seven full-sib families including 222 offspring from a broodstock population at the NCCCWA in Leetown, West Virginia, USA, were used for QTL mapping.
     Breeds associated:
    n/a
    Design:Two stress response phenotypes were used for QTL analyses. First, we estimated animal breeding value (EBV) using four repeated measurements of plasma cortisol and fitting a mixed inheritance linear model under a Bayesian framework with software iBay version 1.46. We also estimated an animal effect using best linear unbiased prediction (BLUP) and fitting four repeated measurements of plasma cortisol in a multivariate mixed model with the software ASReml version 2.0.
    Analysis:We performed combined sire-family (five HS (half-sib) families) and dam-family (seven HS families) HS regression analysis, separately. We also performed a genome scan for genetic loci linked to stress response phenotypes (animal BLUP index and EBV for plasma cortisol) using a variance components (VARCOMP) method.
    Software:GridQTL and SOLAR version 4.0
    Notes: 
    Links:Edit
     Reference
    Authors:Rexroad Caird E, Vallejo Roger L, Liu Sixin, Palti Yniv, Weber Gregory M,
    Affiliation:USDA/ARS National Center for Cool and Cold Water Aquaculture, Leetown, WV, USA.
    Title:QTL affecting stress response to crowding in a rainbow trout broodstock population.
    Journal:BMC genetics, 2012, 13 (): 97
    Links:  PubMed  |  Abstract   |  List all QTL   |  Edit  

     Additional Information
    Comments:BLUP, Sire, GridQTL
    User inputs on reference #23134666
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