Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of spawning time traits:
2
Number of QTL / associations found:
7
Number of chromosomes where QTL / associations are found:
6
Chi-squared (χ2) test: are spawning time traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome 4
0.04762
5
0.9999741
0.9999741
Chromosome 5
0.04762
5
0.9999741
0.9999741
Chromosome 11
0.04762
5
0.9999741
0.9999741
Chromosome 14
1.19048
5
0.9457874
0.9999741
Chromosome 26
0.04762
5
0.9999741
0.9999741
Chromosome 28
0.04762
5
0.9999741
0.9999741
Chi-squared (χ2) test: Which of the 2 spawning time traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Spawning date for 3 year old females
1.30002
1
0.2542096
0.2542096
Spawning date for 4 year old females
3.24998
1
0.07142433
0.1428487
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
6
χ2
=
1.428580
Number of traits:
2
df
=
5
Number of QTLs:
7
p-value
=
0.9211616
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
