QTL #170708 Description:

 Trait Information
Trait name: Pleurisy Vertebrate Trait Ontology: n/a
Reported name: Product Trait Ontology: n/a
Symbol: PLEUR Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:11
QTL Peak Location:0.00 (cM)
QTL Span:0.00-0.00 (cM)
15.3-15.3 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs409974296
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:Polymorphic markers
Analysis type:Association
Model tested:Mendelian
Test base:Genome-wise
Threshold significance level:Suggestive
P_values<0.10
Dominance effect:n/a
Additive effect:n/a
Associated Gene: ()
Links:   Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were lambs from four flocks in New Zealand. Dams were composites of Romney, Coopworth, Perendale, and Texel. Sires were a mixture of dual-purpose and terminal sire composites.
     Breeds associated:
    Design:Animals were genotyped using the Illumina Ovine Infinium HD SNP BeadChip and analyzed for pneumonic lesions and pleurisy incidence. A total of 537,117 SNPs were used for analysis.
    Analysis:GWAS was performed using 1) Efficient Mixed-Model Association eXpedited (EMMAX) using identity-by-state, and 2) haplotype trend regression with a 3-SNP sliding window.
    Software:SVS v8.4.0
    Notes: 
    Links:Edit
     Reference
    Authors:McRae KM, Rowe SJ, Baird HJ, Bixley MJ, Clarke SM
    Affiliation:AgResearch Invermay, Private Bag, Mosgiel, New Zealand
    Title:Genome-wide association study of lung lesions and pleurisy in New Zealand lambs
    Journal:Journal of animal science, 2019, 96(11): 4512-4520
    Links:  PubMed  |  Abstract   |  List all QTL   |  Edit  

     Additional Information
    Comments:EMMAX analysis
    User inputs on reference #30099550
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