Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of fatness traits:
19
Number of QTL / associations found:
186
Number of chromosomes where QTL / associations are found:
26
Chi-squared (χ2) test: are fatness traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
207.83701
25
9.43788e-31
8.179496e-30
Chromosome 1
39.28858
25
0.03445851
4.977340e-02
Chromosome 2
1046.08433
25
9.599719e-205
2.495927e-203
Chromosome 3
163.50374
25
2.618029e-22
1.701719e-21
Chromosome 4
21.51446
25
0.6636017
7.842566e-01
Chromosome 5
70.54681
25
3.190637e-06
6.381274e-06
Chromosome 6
3804.14884
25
9e-41
1.170000e-39
Chromosome 7
70.54681
25
3.190637e-06
6.381274e-06
Chromosome 8
26.41779
25
0.3855801
4.773849e-01
Chromosome 9
3.53590
25
0.9999999
9.999999e-01
Chromosome 10
0.06289
25
0.998329325823115
9.999999e-01
Chromosome 11
12.32093
25
0.983789
9.999999e-01
Chromosome 12
45.82629
25
0.006722006
1.028072e-02
Chromosome 13
26.41779
25
0.3855801
4.773849e-01
Chromosome 14
70.54681
25
3.190637e-06
6.381274e-06
Chromosome 15
70.54681
25
3.190637e-06
6.381274e-06
Chromosome 16
12.32093
25
0.983789
9.999999e-01
Chromosome 17
100.57897
25
5.011558e-11
1.861436e-10
Chromosome 18
45.82629
25
0.006722006
1.028072e-02
Chromosome 19
70.54681
25
3.190637e-06
6.381274e-06
Chromosome 20
45.82629
25
0.006722006
1.028072e-02
Chromosome 22
26.41779
25
0.3855801
4.773849e-01
Chromosome 23
45.82629
25
0.006722006
1.028072e-02
Chromosome 24
100.57897
25
5.011558e-11
1.861436e-10
Chromosome 25
70.54681
25
3.190637e-06
6.381274e-06
Chromosome 26
100.57897
25
5.011558e-11
1.861436e-10
Chi-squared (χ2) test: Which of the 19 fatness traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Abdominal fat weight
15.9091
18
0.5988913
9.966266e-01
Carcass fat percentage
46.24554
18
0.0002731581
7.414291e-04
Fat density
14.0444
18
0.7261923
9.966266e-01
Intermuscular fat weight
5.8889
18
0.9966266
9.966266e-01
Kidney fat weight
5.8889
18
0.9966266
9.966266e-01
Leg fat weight
5.8889
18
0.9966266
9.966266e-01
Loin fat thickness
11.7778
18
0.8584945
9.966266e-01
Loin fat weight
11.7778
18
0.8584945
9.966266e-01
Shoulder fat percentage
5.8889
18
0.9966266
9.966266e-01
Shoulder fat weight
5.8889
18
0.9966266
9.966266e-01
Subcutaneous fat area
72.40002
18
1.766606e-08
3.356551e-07
Subcutaneous fat thickness
49.37938
18
9.363632e-05
3.503964e-04
Subcutaneous fat weight
5.8889
18
0.9966266
9.966266e-01
Tail fat deposition
57.95788
18
4.355734e-06
2.068974e-05
Tail fat weight
17.60001
18
0.4822802
9.966266e-01
Total fat area
45.77303
18
0.0003201485
7.603527e-04
fat weight in carcass
59.10999
18
2.847071e-06
1.803145e-05
internal fat amount
65.77617
18
2.310199e-07
2.194689e-06
intramuscular fat amount
48.89634
18
0.0001106515
3.503964e-04
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
26
χ2
=
6298.193910
Number of traits:
19
df
=
450
Number of QTLs:
186
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
