| QTL Map Information |
|---|
| Chromosome: | 4 |
| QTL Peak Location: | 428.19 (cM) |
| QTL Span: | 428.19-428.19 (cM)
77.3-77.3 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs69587062 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 4.28E-5 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #29483
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Thoroughbred stallions. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina Equine SNP50 BeadChip and analyzed for impaired acrosome reaction. A total of 41521 SNPs were used for analysis. SNPs in candidate genes were selected for further genotyping. |
| Analysis: | Chi-square and Fisher's exact tests were used. |
| Software: | MTDFREML, PLINK, R software, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Raudsepp T, McCue ME, Das Pranab J, Dobson L, Vishnoi M, Fritz KL, Schaefer R, Rendahl AK, Derr JN, Love CC, Varner DD, Chowdhary BP |
| Affiliation: | Department of Veterinary Integrative Biosciences, Texas A&M University, College Station, Texas, USA |
| Title: | Genome-wide association study implicates testis-sperm specific FKBP6 as a susceptibility locus for impaired acrosome reaction in stallions |
| Journal: | PLoS genetics, 2012, 8(12): e1003139 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Impaired acrosome reaction |
User inputs on reference #23284302
Add your comments
Note similar findings
Note contradictions
|
