| QTL Map Information |
|---|
| Chromosome: | 11 |
| QTL Peak Location: | 23.07 (cM) |
| QTL Span: | 23.07-23.07 (cM)
18.8-18.8 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs384497140 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Fleckvieh cattle.
Animal breed (IDs) involved:
Animal breed (IDs) involved: |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina BovineSNP50 BeadChip or BovineHD BeadChip with data imputed to higher density. A total of 16,816,809 SNPs were used in an association analysis with udder conformation traits. |
| Analysis: | Imputed sequence variants were tested for association with each trait in turn using a two-step variance component-based approach. Multi-trait meta-analysis was also performed. |
| Software: | SAMtools, Beagle, GenABEL, EMMAX |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Pausch H, Emmerling R, Schwarzenbacher H, Fries R |
| Affiliation: | Lehrstuhl fuer Tierzucht, Technische Universitaet Muenchen, 85354, Freising, Germany |
| Title: | A multi-trait meta-analysis with imputed sequence variants reveals twelve QTL for mammary gland morphology in Fleckvieh cattle |
| Journal: | Genetics, Selection, Evolution : GSE, 2016, 48(1): 14 |
| Links: |
PubMed | Abstract | List all data
| Edit |
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