QTL #64615 Description:

 Trait Information
Trait name: Somatic cell score Vertebrate Trait Ontology: Milk somatic cell quantity
Reported name: Product Trait Ontology: Milk somatic cell count
Symbol: SCS Clinical Measurement Ontology: Milk somatic cell score
 QTL Map Information
Chromosome:27
QTL Peak Location:62.35 (cM)
QTL Span:62.35-62.35 (cM)
33.8-33.8 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs110903828
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:Association
Model tested:Mendelian
Test base:Chromosome-wise
Threshold significance level:Significant
LOD_scoren/a
P_values<0.05
Dominance effect:n/a
Additive effect:n/a
Associated Gene: ()
Links:   NCBI GeneDB  |  Edit  |   Map view

 Extended information:
(none)

User inputs on QTL #64615
  • Add your annotations
  • Add your comments
  • Report problems
  •  QTL Experiment in Brief
    Animals:Animals were Chinese Holstein cows.
     Breeds associated:
    Design:Animals were genotyped using the Illumina BovineSNP50 BeadChip and analyzed for somatic cell score. A total of 43,885 SNPs were used for analysis.
    Analysis:Mixed model based single locus regression analysis was performed.
    Software:RUNGE, FORTRAN, Haploview
    Notes: 
    Links:Edit
     Reference
    Authors:Wang X, Ma P, Liu J, Zhang Q, Zhang Y, Ding X, Jiang L, Wang Y, Zhang Y, Sun D, Zhang S, Su G, Yu Y
    Affiliation:Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture of China, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, 100193, Bei
    Title:Genome-wide association study in Chinese Holstein cows reveal two candidate genes for somatic cell score as an indicator for mastitis susceptibility
    Journal:BMC genetics, 2015, 16: 111
    Links:  PubMed  |  Abstract   |  List all QTL   |  Edit  

     Additional Information
    Comments:EBV
    User inputs on reference #26370837
  • Add your comments
  • Note similar findings
  • Note contradictions

  • Web Access Statistics © 2003-2020 NAGRP - Bioinformatics Coordination Program.
    Contact: NAGRP Bioinformatics Team
    Helpdesk