QTL #56194 Description:

 Trait Information
Trait name: Subcutaneous rump fat thickness Vertebrate Trait Ontology: Subcutaneous adipose thickness
Reported name: Product Trait Ontology: n/a
Symbol: SCFR Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:27
QTL Peak Location:53.56 (cM)
QTL Span:53.56-53.56 (cM)
29.0-29.0 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs133544468
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:Association
Model tested:Mendelian
Test base:Experiment-wise
Threshold significance level:Significant
LOD_scoren/a
P_values<0.05
Dominance effect:n/a
Additive effect:n/a
Associated Gene: ()
Links:   NCBI GeneDB  |  Edit  |   Map view

 Extended information:
(none)

User inputs on QTL #56194
  • Add your annotations
  • Add your comments
  • Report problems
  •  QTL Experiment in Brief
    Animals:Animals were Nellore cattle.
     Breeds associated:
    Design:Animals were genotyped using the Illumina BovineHD BeadChip or BovineSNP50 v2 BeadChip and analyzed for carcass traits. Data were imputed from 50k to HD. A total of 290,863 SNPs were used for analysis.
    Analysis:The GRAMMAR-Gamma association test was used.
    Software:GenABEL in R
    Notes: 
    Links:Edit
     Reference
    Authors:Santana M H A, Ventura R V, Utsunomiya Y T, Neves H H R, Alexandre P A, Oliveira Junior G A, Gomes R C, Bonin M N, Coutinho L L, Garcia J F, Silva S L, Fukumasu H, Leme P R, Ferraz J B S
    Affiliation:Faculdade de Zootecnia e Engenharia de Alimentos - USP, Pirassununga, Brazil
    Title:A genomewide association mapping study using ultrasound-scanned information identifies potential genomic regions and candidate genes affecting carcass traits in Nellore cattle
    Journal:Journal of animal breeding and genetics, 2015, 132(6):420-7
    Links:  PubMed  |  Abstract   |  List all QTL   |  Edit  
    User inputs on reference #26016521
  • Add your comments
  • Note similar findings
  • Note contradictions

  • Web Access Statistics © 2003-2020 NAGRP - Bioinformatics Coordination Program.
    Contact: NAGRP Bioinformatics Team
    Helpdesk