QTL #36526 Description:

 Trait Information
Trait name: Clinical mastitis Vertebrate Trait Ontology: n/a
Reported name: Product Trait Ontology: n/a
Symbol: CM Clinical Measurement Ontology: Disease incidence/prevalence measurement
 QTL Map Information
Chromosome:20
QTL Peak Location:41.62 (cM)
QTL Span:41.62-41.62 (cM)
36.0-36.0 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs210536202
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Analysis type:Association
Model tested:Mendelian
Test base:Experiment-wise
Threshold significance level:Significant
VARIANCEn/a
P_values<0.05
LOD_scoren/a
LS_meann/a
Dominance effect:n/a
Additive effect:n/a
Associated Gene: ()
Links:   NCBI GeneDB  |  Edit  |   Map view
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  •  QTL Experiment in Brief
    Animals:Animals were Nordic Holstein, Danish Jersey, and Nordic Red cattle.
     Breeds associated:
    Design:Animals were genotyped using the Illumina BovineSNP50 BeadChip and analyzed for mastitis phenotypes. Data were imputed to the BovineHD chip and 648,219 SNPs were used. HD genotyped for six targeted regions were umputed for sequence level.
    Analysis:A linear mixed model was used, with association assessed by single-locus regression analysis.
    Software:DMU
    Notes: 
    Links:Edit
     Reference
    Authors:Sahana G, Guldbrandtsen B, Thomsen B, Holm L-E, Panitz F, Brøndum R F, Bendixen C, Lund M S
    Affiliation:Center for Quantitative Genetics and Genomics, Department of Molecular Biology and Genetics, Aarhus University, 8830 Tjele, Denmark
    Title:Genome-wide association study using high-density single nucleotide polymorphism arrays and whole-genome sequences for clinical mastitis traits in dairy cattle
    Journal:Journal of dairy science, 2014, 97(11): 7258-75
    Links:  PubMed  |  Abstract   |  List all QTL   |  Edit  

     Additional Information
    Comments:CM index
    User inputs on reference #25151887
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