| QTL Map Information |
|---|
| Chromosome: | 19 |
| QTL Peak Location: | 107.19 (cM) |
| QTL Span: | 107.19-107.19 (cM)
56.8-56.8 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs211564974 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Nordic Holstein, Danish Jersey, and Nordic Red cattle. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina BovineSNP50 BeadChip and analyzed for mastitis phenotypes. Data were imputed to the BovineHD chip and 648,219 SNPs were used. HD genotyped for six targeted regions were umputed for sequence level. |
| Analysis: | A linear mixed model was used, with association assessed by single-locus regression analysis. |
| Software: | DMU |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Sahana G, Guldbrandtsen B, Thomsen B, Holm L-E, Panitz F, Brøndum R F, Bendixen C, Lund M S |
| Affiliation: | Center for Quantitative Genetics and Genomics, Department of Molecular Biology and Genetics, Aarhus University, 8830 Tjele, Denmark |
| Title: | Genome-wide association study using high-density single nucleotide polymorphism arrays and whole-genome sequences for clinical mastitis traits in dairy cattle |
| Journal: | Journal of dairy science, 2014, 97(11): 7258-75 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | CM between -15 and 150d after third calving |
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