QTL #32594 Description:

 Trait Information
Trait name: Milk palmitic acid content Vertebrate Trait Ontology: Milk fatty acid C16:0 amount
Reported name: Milk palmitic acid percentage Product Trait Ontology: Milk fatty acid C16:0 content
Symbol: MFA-C16:0 Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:21
QTL Peak Location:51.91 (cM)
QTL Span:51.91-51.91 (cM)
41.7-41.7 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs110007835
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Analysis type:Association
Model tested:Mendelian
Test base:Comparison-wise
Threshold significance level:Significant
VARIANCEn/a
P_values1.84E-06
LOD_scoren/a
LS_meann/a
Dominance effect:n/a
Additive effect:n/a
Associated Gene:n/a
Links:   NCBI GeneDB  |  Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were Chinese Holstein cattle.
     Breeds associated:
    n/a
    Design:Animals were genotyped using the Illumina BovineSNP50 BeadChip and analyzed for milk fatty acid content. A total of 40,604 SNPs were used for analysis.
    Analysis:GWAS analyses were performed with the quantitative trait procedure (additive model) and empirical p-values estimated based on the Wald statistic.
    Software:PLINK, R software
    Notes:Genome-wise suggestive (p-val 0.1) corresponds to nominal p-value 2.46E-6. Only data below this threshold have been entered.
    Links:Edit
     Reference
    Authors:Li C, Sun D, Zhang S, Wang S, Wu X, Zhang Q, Liu L, Li Y, Qiao L
    Affiliation:Beijing Dairy Cattle Center, Beijing, China.
    Title:Genome wide association study identifies 20 novel promising genes associated with milk fatty acid traits in Chinese Holstein.
    Journal:PloS one, 2014, 9(5): e96186
    Links:  PubMed  |  Abstract   |  List all QTL   |  Edit  
    User inputs on reference #24858810
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