| QTL Map Information |
|---|
| Chromosome: | 5 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
88.4-88.4 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs109772503 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.01 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #313650
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Mexican Holstein cattle. |
| Breeds associated:
|
| Design: | Animals were genotyped using a number of different SNP chips and GWAS were performed for milk production traits. A total of 88,911 SNPs were used for analysis. |
| Analysis: | The single-step genomic best linear unbiased prediction (BLUP) method was used. |
| Software: | BLUPF90, PLINK 1.9, postGsf90 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Cortes-Hernández JG, García-Ruiz A, Peñagaricano F, Montaldo HH, Ruiz-López FJ |
| Affiliation: | PhD Program in Animal Health and Production Science, National Autonomous University of Mexico, Mexico, CDMX, Mexico |
| Title: | Uncovering the genetic basis of milk production traits in Mexican Holstein cattle based on individual markers and genomic windows |
| Journal: | PLoS One, 2025, 20(2): e0314888 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #39899530
Add your comments
Note similar findings
Note contradictions
|
