| QTL Map Information |
|---|
| Chromosome: | 17 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
|
 |
Upper, "Suggestive": | rs110840947 |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | rs42834114 |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | n/a |
| Threshold significance level: | Suggestive |
 |
VARIANCE | 0.48% | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | GATB (glutamyl-tRNA amidotransferase subunit B) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Holstein cattle. |
| Breeds associated:
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| Design: | Animals had genotypes imputed to the 80K SNP panel used for UK national dairy cattle genomic evaluation. GWAS were performed for claw horn lesion susceptibility and severity. A total of 65,211 SNPs were used for analysis. |
| Analysis: | GWAS were performed using both single markers and 0.65-Mb sliding windows. |
| Software: | THRGIBBS1F90, AIRELMF90, BLUPF90, GEMMA, POSTGSF90, PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Li B, Barden M, Kapsona V, Sánchez-Molano E, Anagnostopoulos A, Griffiths BE, Bedford C, Dai X, Coffey M, Psifidi A, Oikonomou G, Banos G |
| Affiliation: | Department of Animal and Veterinary Sciences, The Roslin Institute Building, Scotland's Rural College (SRUC), Easter Bush, Midlothian, EH25 9RG, UK |
| Title: | Single-step genome-wide association analyses of claw horn lesions in Holstein cattle using linear and threshold models |
| Journal: | Genetics, Selection, Evolution : GSE, 2023, 55(1): 16 |
| Links: |
PubMed | Abstract | List all data
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