QTL #24769 Description:

 Trait Information
Trait name: Body weight (weaning) Vertebrate Trait Ontology: Body mass
Reported name: Weaning weight-maternal milk Product Trait Ontology: n/a
Symbol: WWT Clinical Measurement Ontology: Body weight
 QTL Map Information
Chromosome:29
QTL Peak Location:63.42 (cM)
QTL Span:62.74-64.09 (cM)
44.1-45.0 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":rs110552089
Peak:rs43709648
Lower, "Significant":rs109977592
Lower, "Suggestive":n/a
Analysis type:Association
Model tested:n/a
Test base:Genome-wise
Threshold significance level:-
VARIANCE1.6
P_valuesn/a
LOD_scoren/a
LS_meann/a
PostProbInc0.95
Dominance effect:n/a
Additive effect:n/a
Associated Gene:n/a
Links:   NCBI GeneDB  |  Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:10 US cattle breeds (3,570 Black Angus, 1,328 Brangus, 200 Charolais, 1,374 Gelbvieh, 2,779 Hereford, 2,239 Limousin, 1,761 Red Angus, 328 Shorthorn, 574 Maine-Anjou and 4,124 Simmental)
     Breeds associated:
    Design:Genotypes of 18,274 animals (BovineSNP50 BeadChip versions B or C or with BovineHD BeadChip) were analyzied for association with twelve traits were analyzed (birth, carcass, mature and yearling weights; weaning weight and calving ease direct and maternal; fat thickness; marbling; ribeye muscle area and yield grade).
    Analysis:all 54,555 SNP markers were simultaneously considered as predictors of the response variables to estimate marker effects in a mixture model in which non-zero SNP effects are drawn from distributions with marker specific variances and some known fraction of markers (pi) have no effect on the trait was used to estimate marker effects.
    Software:GenSel
    Notes: 
    Links:Edit
     Reference
    Authors:Mahdi Saatchi, Robert D Schnabel, Jeremy F Taylor and Dorian J Garrick
    Affiliation:Iowa State University
    Title:Large-effect pleiotropic or closely linked QTL segregate within and across ten US cattle breeds
    Journal:BMC Genomics, 2014, 15:442
    Links:  PubMed  |  Abstract   |  List all QTL   |  Edit  

     Additional Information
    Comments:B allele frequency=0.08; weaning weight attributable to milk and mothering ability
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