| QTL Map Information |
|---|
| Chromosome: | 5 |
| QTL Peak Location: | 122.69 (cM) |
| QTL Span: | 122.22-123.17 (cM)
105.7-106.5 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs109969273 |
| Peak: | rs41654528 |
| Lower, "Significant": | rs110912524 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | n/a |
 |
PostProbInc | 0.97 | | VARIANCE | 1.98 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | 10 US cattle breeds (3,570 Black Angus, 1,328 Brangus, 200 Charolais, 1,374 Gelbvieh, 2,779 Hereford, 2,239 Limousin, 1,761 Red Angus, 328
Shorthorn, 574 Maine-Anjou and 4,124 Simmental) |
| Breeds associated:
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| Design: | Genotypes of 18,274 animals (BovineSNP50 BeadChip versions B or C or with BovineHD BeadChip) were analyzied for association with twelve traits were analyzed (birth, carcass, mature and yearling weights; weaning weight and calving ease direct and maternal; fat thickness; marbling; ribeye muscle area and yield grade). |
| Analysis: | all 54,555 SNP markers were simultaneously considered as predictors of the response variables to estimate marker effects in a mixture model in which non-zero SNP effects are drawn from distributions with marker specific variances and some known fraction of markers (pi) have no effect on the trait was used to estimate marker effects. |
| Software: | GenSel |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Mahdi Saatchi, Robert D Schnabel, Jeremy F Taylor and Dorian J Garrick |
| Affiliation: | Iowa State University |
| Title: | Large-effect pleiotropic or closely linked QTL segregate within and across ten US cattle breeds |
| Journal: | BMC Genomics, 2014, 15:442 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | B allele frequency=0.36 |
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