| QTL Map Information |
|---|
| Chromosome: | 12 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
|
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs381259468 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
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P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | LOC100337390 (multidrug resistance-associated protein 4-like) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
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| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were German and Swiss Holstein cows. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina BovineHD BeadChip, with data imputed to sequence level, and GWAS was performed for bilateral convergent strabismus with exophthalmos. A total of 10,772,372 SNPs were used for analysis. |
| Analysis: | Logistic regression was used for single-marker GWAS. |
| Software: | PLINK 1.9, Beagle 5.0 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Bögeholz A, Falker-Gieske C, Guélat M, Gurtner C, Hunziker S, Oevermann A, Thaller G, Drögemüller C, Tetens J |
| Affiliation: | Department of Animal Sciences, Georg-August-University Göttingen, Burckhardtweg 2, 37077 Göttingen, Germany |
| Title: | GWAS Hits for Bilateral Convergent Strabismus with Exophthalmos in Holstein Cattle Using Imputed Sequence Level Genotypes. |
| Journal: | Genes, 2021, 12(7):1039 |
| Links: |
PubMed | Abstract | List all data
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