| QTL Map Information |
|---|
| Chromosome: | 19 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
|
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs41920179 |
| Peak: | |
| Lower, "Significant": | rs110055252 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
VARIANCE | 0.66% | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #223510
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Canadian Holstein cattle. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina BovineSNP50 BeadChip, with a subset genotyped using a low-density array of SNPs located within or near candidate genes for ketosis. Data were imputed to the full SNP dataset and GWAS was performed for clinical and subclinical ketosis. A total of 57,957 SNPs were used for analysis. |
| Analysis: | A weighted single-step method was used for GWAS. |
| Software: | POSTGSF90, FImpute V2.2, BLUPF90 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Soares RAN, Vargas G, Duffield T, Schenkel F, Squires EJ |
| Affiliation: | Department of Animal Biosciences, Center for Genetic Improvement of Livestock, University of Guelph, Guelph, Ontario, Canada N1G 2W1 |
| Title: | Genome-wide association study and functional analyses for clinical and subclinical ketosis in Holstein cattle |
| Journal: | Journal of dairy science, 2021, S0022-0302(21)00646-9 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | lactation 1 |
User inputs on reference #34099305
Add your comments
Note similar findings
Note contradictions
|
