| QTL Map Information |
|---|
| Chromosome: | 10 |
| QTL Peak Location: | 31.19 (cM) |
| QTL Span: | 31.19-31.19 (cM)
28.0-28.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs445292907 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | OR4F14I (olfactory receptor family 4 subfamily F member 14I) |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #213517
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Brangus cattle. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina Bovine GGP F250 array and analyzed for hair length. A total of 109,538 SNPs were used for analysis. |
| Analysis: | Hair length phenotypes were pre-adjusted for the fixed effect collection group using linear model procedures in R. The residuals from these models were used in GWASs using the univariate procedures of GEMMA that fitted a single, standardized, genomic relationship matrix to account for the genetic covariance among animals. |
| Software: | PLINK, GEMMA, R software |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Sarlo Davila K M, Howell A, Nunez A, Orelien A, Roe V, Rodriguez E, Dikmen S, Mateescu R G |
| Affiliation: | Animal Sciences, University of Florida, 2250 Shealy Dr, Gainesville, FL, 32608, USA |
| Title: | Genome-wide association study identifies variants associated with hair length in Brangus cattle |
| Journal: | Animal Genetics, 2020, 51(5): 811-814 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #32548856
Add your comments
Note similar findings
Note contradictions
|
