QTL #20638 Description:

 Trait Information
Trait name: Bovine tuberculosis susceptibility Vertebrate Trait Ontology: n/a
Reported name: Product Trait Ontology: n/a
Symbol: BTBS Clinical Measurement Ontology: Disease process measurement
 QTL Map Information
Chromosome:22
QTL Peak Location:91.70 (cM)
QTL Span:91.70-91.70 (cM)
58.6-58.6 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs42287005
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Analysis type:Association
Model tested:Mendelian
Test base:Chromosome-wise
Threshold significance level:Significant
VARIANCEn/a
P_values4.02E-6
LOD_scoren/a
LS_meann/a
Dominance effect:n/a
Additive effect:n/a
Associated Gene:n/a
Links:   NCBI GeneDB  |  Edit  |   Map view
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  •  QTL Experiment in Brief
    Animals:Animals were Holstein-Friesian dairy cattle.
     Breeds associated:
    Design:Animals were genotyped for 54001 SNPs using the Illumina BovineSNP50 BeadChip and analyzed for tuberculosis susceptibility. For final analysis, 44426 SNPs were used.
    Analysis:A linear model was used.
    Software:ASREML, R software, GenABEL
    Notes: 
    Links:Edit
     Reference
    Authors:Finlay EK, Berry DP, Wickham B, Gormley EP, Bradley DG
    Affiliation:Department of Genetics, Smurfit Institute, Trinity College Dublin, Dublin, Ireland.
    Title:A genome wide association scan of bovine tuberculosis susceptibility in Holstein-Friesian dairy cattle.
    Journal:PloS one, 2012, 7(2): e30545
    Links:  PubMed  |  Abstract   |  List all QTL   |  Edit  
    User inputs on reference #22355315
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