QTL #20047 Description:

 Trait Information
Trait name: Milk monounsaturated fatty acid content Vertebrate Trait Ontology: Milk monounsaturated fatty acid amount
Reported name: Product Trait Ontology: Milk monounsaturated fatty acid content
Symbol: MMUFA Clinical Measurement Ontology: Milk monounsaturated fatty acid measurement
 QTL Map Information
Chromosome:22
QTL Peak Location:82.70 (cM)
QTL Span:82.70-82.70 (cM)
52.8-52.8 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs135605905
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Analysis type:Association
Model tested:Mendelian
Test base:n/a
Threshold significance level:Significant
VARIANCEn/a
P_values5.32E-3
LOD_scoren/a
LS_meann/a
Dominance effect:n/a
Additive effect:n/a
Associated Gene:SCAP (SREBF chaperone)
Links:   NCBI GeneDB  |  Edit  |   Map view

 Extended information:
(none)

User inputs on QTL #20047
  • Add your annotations
  • Add your comments
  • Report problems
  •  QTL Experiment in Brief
    Animals:Animals were Holstein cattle.
     Breeds associated:
    Design:Animals were genotyped for SNPs in SREBP1, SCAP, INSIG1, INSIG2, MBTPS2, SCD1, and SCD5 and analyzed for milk composition.
    Analysis:A linear regression model was used.
    Software:SNP Variation Suite
    Notes: 
    Links:Edit
     Reference
    Authors:Rincon G, Islas-Trejo A, Castillo AR, Bauman DE, German BJ, Medrano JF
    Affiliation:Department of Animal Science, University of California, Davis, CA 95616, USA.
    Title:Polymorphisms in genes in the SREBP1 signalling pathway and SCD are associated with milk fatty acid composition in Holstein cattle.
    Journal:The Journal of dairy research, 2012, 79 (1): 66-75
    Links:  PubMed  |  Abstract   |  List all QTL   |  Edit  
    User inputs on reference #22114848
  • Add your comments
  • Note similar findings
  • Note contradictions

  • Web Access Statistics © 2003-2019 NAGRP - Bioinformatics Coordination Program.
    Contact: NAGRP Bioinformatics Team
    Helpdesk