QTL #168204 Description:

 Trait Information
Trait name: 305-day milk yield Vertebrate Trait Ontology: Milk amount
Reported name: Product Trait Ontology: n/a
Symbol: MY305 Clinical Measurement Ontology: 305-day milk yield
 QTL Map Information
Chromosome:27
QTL Peak Location:24.65 (cM)
QTL Span:24.65-24.65 (cM)
14.3-14.3 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs42116149
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:Association
Model tested:n/a
Test base:Genome-wise
Threshold significance level:Significant
LOD_scoren/a
P_values2.06E-02
Dominance effect:n/a
Additive effect:n/a
Associated Gene:n/a
Links:   Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:The data set consisted of 781 primiparious Holstein cows
     Breeds associated:
    Design:Animals were genotyped using the BovineHD BeadChip (777,962 SNPs) to identify QTL and leading edge genes associated with 305-day milk yield (kg). Data was collected on healthy animals from six dairies from central Washington. Dairy and energy corrected milk were used as covariates in the analysis.
    Analysis:A genome-wide association analysis (GWAA) identified QTL and a gene set enrichment analysis with SNP data (GSEA-SNP) identified gene sets and leading edge genes influencing 305-day milk yield.
    Software:Golden Helix SNP and Variation Suite (SVS), R - GenAbel
    Notes: 
    Links:Edit
     Reference
    Authors:Clancey E, Kiser JN, Moraes JGN, Dalton J, Spencer TE, Neibergs HL
    Affiliation:Department of Animal Sciences, Washington State University, Pullman WA 99164; Division of Animal Sciences, University of Missouri, Columbia MO 65211; Department of Animal and Veterinary Sciences, University of Idaho, Caldwell ID 83605
    Title:Genome-Wide association analysis and gene set enrichment analysis-SNP identify genes associated with 305-day milk yield in Holstein dairy cows
    Journal:Animal Genetics, 2019,
    Links:  No PubMed entry  |  Abstract   |  List all QTL   |  Edit  

     Additional Information
    Comments:GSEA gene proxy for ACSL1
    User inputs on reference #ISU0100
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