QTL #167561 Description:

 Trait Information
Trait name: Daughter pregnancy rate Vertebrate Trait Ontology: Fertility trait
Reported name: Product Trait Ontology: n/a
Symbol: DPR Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:18
QTL Peak Location:57.88 (cM)
QTL Span:57.88-57.88 (cM)
44.2-44.2 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs81177959
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Analysis type:Association
Model tested:-
Test base:-
Threshold significance level:Significant
VARIANCEn/a
P_values2.631E-11
LOD_scoren/a
LS_meann/a
Dominance effect:n/a
Additive effect:n/a
Associated Gene:CHST8 (carbohydrate sulfotransferase 8)
Links:   Edit  |   Map view
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  •  QTL Experiment in Brief
    Animals:Animals were US Holstein cattle.
     Breeds associated:
    Design:Concordance between quantitative trait locus genotype as determined by the a posteriori granddaughter design and marker genotype was determined for 30 trait-by-chromosomal segment effects segregating in the US Holstein population.
    Analysis:For each quantitative trait locus, effects of the 30 polymorphisms with highest concordance scores for the analyzed trait were computed by stepwise regression for predicted transmitting abilities of 26,750 bulls with progeny test and imputed genotypes.
    Software:SAMtools
    Notes: 
    Links:Edit
     Reference
    Authors:Weller J I, Bickhart D M, Wiggans G R, Tooker M E, O'Connell J R, Jiang J, Ron M, VanRaden P M
    Affiliation:USDA, Agricultural Research Service, Animal Genomics and Improvement Laboratory, Beltsville, MD 20705-2350
    Title:Determination of quantitative trait nucleotides by concordance analysis between quantitative trait loci and marker genotypes of US Holsteins
    Journal:Journal of dairy science, 2018, 101(10): 9089-9107
    Links:  PubMed  |  Abstract   |  List all QTL   |  Edit  

     Additional Information
    Comments:candidate causal mutation
    User inputs on reference #30031583
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