Release 56
(Apr 24, 2025)

QTL 15923 Description:

 Trait Information
Trait name: Subcutaneous fat thickness Vertebrate Trait Ontology: Subcutaneous adipose thickness
Trait details: backfat thickness Product Trait Ontology: n/a
Symbol: FATTH Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:5
QTL Peak Location:27.6 (cM)
QTL Span:13.16-13.36 (cM)
11.7-11.8 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:-
Analysis type:Association
Model tested:Mendelian
Test base:-
Threshold significance level:Significant
P_values0.007
Dominance effect:-0.223
Additive effect:-0.097
Associated Gene:PDE1B (phosphodiesterase 1B, calmodulin-dependent)
Cis/Trans acting type:
Links:   Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were Hanwoo (Korean) cattle.
     Breeds associated:
    n/a
    Design:Animals were genotyped for five SNPs in PDE1B and analyzed for carcass traits.
    Analysis:The general linear model procedure was used.
    Software:SAS
    Notes: 
    Links:Edit

     Reference
    Authors:Shin S, Heo J, Yeo J, Lee C, Chung E
    Affiliation:Division of Animal Science and Resources, College of Life Science and Natural Resources, Sangji University, 660 Usnadong, Wonju, Gangwondo, 220-702, Korea
    Title:Genetic association of Phosphodiesterase 1B (PDE1B) with carcass traits in Korean cattle.
    Journal:Molecular biology reports, 2012, 39(4): 4869-74
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  

     Additional Information
    Comments:g.17122A>G
    User inputs on reference #21960012
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  • Cite this Data:

    Animal QTLdb: QTL15923 was published in 2012, and was curated into QTLdb on 2012-02-20. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:15923

     

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