QTL #156722 Description:

 Trait Information
Trait name: Milk yield Vertebrate Trait Ontology: Milk amount
Reported name: Product Trait Ontology: n/a
Symbol: MY Clinical Measurement Ontology: Milk yield
 QTL Map Information
Chromosome:17
QTL Peak Location:83.30 (cM)
QTL Span:83.05-83.55 (cM)
63.9-64.3 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":rs460096625
Peak:rs380144035
Lower, "Significant":rs434681526
Lower, "Suggestive":n/a
Analysis type:QTL
Model tested:Mendelian
Test base:Genome-wise
Threshold significance level:Significant
VARIANCEn/a
P_values<0.05
LOD_scoren/a
LS_meann/a
Dominance effect:n/a
Additive effect:n/a
Associated Gene:CORO1C (coronin 1C)
Links:   Edit  |   Map view

 Extended information:
(none)

User inputs on QTL #156722
  • Add your annotations
  • Add your comments
  • Report problems
  •  QTL Experiment in Brief
    Animals:Animals were Nordic Holstein cattle.
     Breeds associated:
    Design:Animals were genotyped using the Illumina Bovine SNP50 BeadChip, with data imputed to whole-genome sequence, and analyzed for milk yield traits. A total of 15,355,402 SNPs were used for analysis.
    Analysis:A conditional GWAS was performed using a method in which the data was reanalyzed after fitting only the lead SNP on a chromosome.
    Software:IMPUTE2, Minimac2, Beagle, GCTA
    Notes: 
    Links:Edit
     Reference
    Authors:Cai Z, Guldbrandtsen B, Lund MS, Sahana G
    Affiliation:Center for Quantitative Genetics and Genomics, Department of Molecular Biology and Genetics, Aarhus University, 8830, Tjele, Denmark
    Title:Dissecting closely linked association signals in combination with the mammalian phenotype database can identify candidate genes in dairy cattle
    Journal:BMC genetics, 2018, 19(1): 30
    Links:  PubMed  |  Abstract   |  List all QTL   |  Edit  
    User inputs on reference #29751743
  • Add your comments
  • Note similar findings
  • Note contradictions

  • Web Access Statistics © 2003-2020 NAGRP - Bioinformatics Coordination Program.
    Contact: NAGRP Bioinformatics Team
    Helpdesk