QTL #156685 Description:

 Trait Information
Trait name: Milk protein yield Vertebrate Trait Ontology: Milk protein amount
Reported name: Product Trait Ontology: Milk protein yield
Symbol: PY Clinical Measurement Ontology: Milk protein yield
 QTL Map Information
Chromosome:11
QTL Peak Location:41.58 (cM)
QTL Span:40.40-42.75 (cM)
33.7-35.7 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":rs208991955
Peak:rs135010139
Lower, "Significant":rs211344120
Lower, "Suggestive":n/a
Analysis type:QTL
Model tested:Mendelian
Test base:Genome-wise
Threshold significance level:Significant
LOD_scoren/a
P_values<0.05
Dominance effect:n/a
Additive effect:n/a
Associated Gene: ()
Links:   Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were Nordic Holstein cattle.
     Breeds associated:
    Design:Animals were genotyped using the Illumina Bovine SNP50 BeadChip, with data imputed to whole-genome sequence, and analyzed for milk yield traits. A total of 15,355,402 SNPs were used for analysis.
    Analysis:A conditional GWAS was performed using a method in which the data was reanalyzed after fitting only the lead SNP on a chromosome.
    Software:IMPUTE2, Minimac2, Beagle, GCTA
    Notes: 
    Links:Edit
     Reference
    Authors:Cai Z, Guldbrandtsen B, Lund MS, Sahana G
    Affiliation:Center for Quantitative Genetics and Genomics, Department of Molecular Biology and Genetics, Aarhus University, 8830, Tjele, Denmark
    Title:Dissecting closely linked association signals in combination with the mammalian phenotype database can identify candidate genes in dairy cattle
    Journal:BMC genetics, 2018, 19(1): 30
    Links:  PubMed  |  Abstract   |  List all QTL   |  Edit  
    User inputs on reference #29751743
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