QTL #142666 Description:

 Trait Information
Trait name: Non-return rate Vertebrate Trait Ontology: Fertility trait
Reported name: Product Trait Ontology: n/a
Symbol: NRR Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:17
QTL Peak Location:n/a
QTL Span:n/a
73.9-73.9 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs377846790
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:Association
Model tested:Mendelian
Test base:Comparison-wise
Threshold significance level:Significant
P_values1.78E-07
Dominance effect:n/a
Additive effect:n/a
Associated Gene:n/a
Links:   Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were Brown Swiss cattle.
     Breeds associated:
    Design:Animals were genotyped at various SNP densities, with data imputed to full-sequence, and analyzed for female fertility traits. After filtering, 9,748,130-9,999,287 variants were used for GWAS.
    Analysis:A mixed model approach was used.
    Software:Minimac, FImpute, EMMAX, GCTA, R software, PLINK
    Notes: 
    Links:Edit
     Reference
    Authors:Frischknecht M, Bapst B, Seefried FR, Signer-Hasler H, Garrick D, Stricker C, Intergenomics Consortium, Fries R, Russ I, Sölkner J, Bieber A, Strillacci MG, Gredler-Grandl B, Flury C
    Affiliation:School of Agricultural, Forest and Food Sciences HAFL, Bern University of Applied Sciences, Länggasse 85, 3052, Zollikofen, Switzerland
    Title:Genome-wide association studies of fertility and calving traits in Brown Swiss cattle using imputed whole-genome sequences.
    Journal:BMC genomics, 2017, 18(1): 910
    Links:  PubMed  |  Abstract   |  List all QTL   |  Edit  

     Additional Information
    Comments:cows
    User inputs on reference #29178833
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