QTL #140259 Description:

 Trait Information
Trait name: Milk caproic acid content Vertebrate Trait Ontology: Milk fatty acid C6:0 amount
Reported name: Product Trait Ontology: Milk fatty acid C6:0 content
Symbol: MFA-C6:0 Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:17
QTL Peak Location:n/a
QTL Span:n/a
30.1-30.1 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs110127535
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Analysis type:Association
Model tested:Mendelian
Test base:-
Threshold significance level:Significant
VARIANCEn/a
P_values8.13E-4
LOD_scoren/a
LS_meann/a
Dominance effect:n/a
Additive effect:n/a
Associated Gene: ()
Links:   Edit  |   Map view
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  •  QTL Experiment in Brief
    Animals:Animals were primiparous Holstein-Friesian cows.
     Breeds associated:
    Design:Animals were genotyped using a 50k SNP chip, with data imputed to 777k then to whole-genome sequence level, and analyzed for milk fatty acid composition. The final data set included 1,157,678 called sites on BTA17.
    Analysis:An animal model was used.
    Software:GATK, Beagle, ASReml, R software, PLINK
    Notes: 
    Links:Edit
     Reference
    Authors:Duchemin S I, Bovenhuis H, Megens H-J, Van Arendonk J A M, Visker M H P W
    Affiliation:Animal Breeding and Genomics Centre, Wageningen University, PO Box 338, 6700 AH Wageningen, the Netherlands
    Title:Fine-mapping of BTA17 using imputed sequences for associations with de novo synthesized fatty acids in bovine milk
    Journal:Journal of dairy science, 2017, 100(11): 9125-9135
    Links:  PubMed  |  Abstract   |  List all QTL   |  Edit  

     Additional Information
    Comments:summer milk samples
    User inputs on reference #28865853
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