QTL #125471 Description:

 Trait Information
Trait name: Lactation persistency Vertebrate Trait Ontology: Lactation duration
Reported name: Product Trait Ontology: n/a
Symbol: LACTPER Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:1
QTL Peak Location:n/a
QTL Span:n/a
156.1-156.1 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs43288865
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Analysis type:Association
Model tested:Mendelian
Test base:Genome-wise
Threshold significance level:Significant
VARIANCEn/a
P_values<0.05
LOD_scoren/a
LS_meann/a
Dominance effect:n/a
Additive effect:n/a
Associated Gene:n/a
Links:   Edit  |   Map view

 Extended information:
(none)

User inputs on QTL #125471
  • Add your annotations
  • Add your comments
  • Report problems
  •  QTL Experiment in Brief
    Animals:The data set consisted of 445 Chinese Holstein dairy cows.
     Breeds associated:
    Design:Animals were genotyped using the GGP BovineLD V3 SNP chip and analyzed for milk production. The final marker set included 441 animals with 20,326 SNP genotypes.
    Analysis:Both fixed-effect (FLM) and random-effect models (MLM) were used in the study.
    Software:PLINK(v1.07)and GCTA (v1.2.4)
    Notes: 
    Links:Edit
     Reference
    Authors:Yue SJ, Zhao YQ, Gu XR, Yin B, Jiang YL, Wang ZH, Shi KR
    Affiliation:College of Animal Science and Technology, Shandong Agricultural University, Shandong Key Laboratory of Animal Bioengineering and Disease Prevention, Taian, Shandong, 271018, P. R. China.
    Title:A genome-wide association study suggests new candidate genes for milk production traits in Chinese Holstein cattle
    Journal:Animal Genetics, 2017, 48(6):677-681
    Links:  PubMed  |  Abstract   |  List all QTL   |  Edit  

     Additional Information
    Comments:Significant SNPs identified by using fixed-effect model (FLM)
    User inputs on reference #28857209
  • Add your comments
  • Note similar findings
  • Note contradictions

  • Web Access Statistics © 2003-2019 NAGRP - Bioinformatics Coordination Program.
    Contact: NAGRP Bioinformatics Team
    Helpdesk