| QTL Map Information |
|---|
| Chromosome: | 9 |
| QTL Peak Location: | 12.81 (cM) |
| QTL Span: | 12.81-12.81 (cM)
11.6-11.6 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs42559373 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
P_values | 0.001 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | RIMS1 (regulating synaptic membrane exocytosis 1) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Holstein bulls.
Animal breed (IDs) involved: 106
Animal breed (IDs) involved: |
| Breeds associated:
|
| Design: | Animals were genotyped for 58,029 SNPs and analyzed for association with sire conception rate. |
| Analysis: | Two GWAS approaches were used: single-step genomic best linear unbiased prediction (ssGBLUP) and classical genome-wide association study using single-marker regression analysis. |
| Software: | BLUPF90, R software |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Han Y, Peñagaricano F |
| Affiliation: | University of Florida Genetics Institute, University of Florida, Gainesville, FL, 32610, USA |
| Title: | Unravelling the genomic architecture of bull fertility in Holstein cattle |
| Journal: | BMC genetics, 2016, 17(1): 143 |
| Links: |
PubMed | Abstract | List all data
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