| QTL Map Information |
|---|
| Chromosome: | 3 |
| QTL Peak Location: | 89.25 (cM) |
| QTL Span: | 89.25-89.25 (cM)
89.2-89.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs211201738 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 2.11E-07 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Holstein cows.
Animal breed (IDs) involved: |
| Breeds associated:
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| Design: | Animals were genotyped using either the Illumina BovineSNP50 v1 BeadChip or the GeneSeek Genomic Profiler Bovine HD. Genotypes were imputed from one data set to the other; a total of 85,485 SNPs were used for GWAS. Three target regions were fine-mapped using imputed sequence variants. |
| Analysis: | Single-locus regression was performed using a linear mixed model. |
| Software: | ASReml, Beagle, MINIMAC2 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Tenghe A M M, Bouwman A C, Berglund B, Strandberg E, de Koning D J, Veerkamp R F |
| Affiliation: | Animal Breeding and Genomics Centre, Wageningen UR Livestock Research, PO Box 338, 6700 AH Wageningen, the Netherlands; Animal Breeding and Genomics Centre, Wageningen University, PO Box 338, 6700 AH Wageningen, the Netherlands |
| Title: | Genome-wide association study for endocrine fertility traits using single nucleotide polymorphism arrays and sequence variants in dairy cattle |
| Journal: | Journal of dairy science, 2016, 99(7): 5470-85 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Proportion of samples with luteal activity |
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