QTL #120305 Description:

 Trait Information
Trait name: Luteal activity Vertebrate Trait Ontology: Female fertility trait
Reported name: Product Trait Ontology: n/a
Symbol: LUTACT Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:2
QTL Peak Location:n/a
QTL Span:n/a
55.6-55.6 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs42999674
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Analysis type:Association
Model tested:Mendelian
Test base:Comparison-wise
Threshold significance level:Significant
VARIANCEn/a
P_values1.22E-06
LOD_scoren/a
LS_meann/a
Dominance effect:n/a
Additive effect:n/a
Associated Gene:n/a
Links:   Edit  |   Map view
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  •  QTL Experiment in Brief
    Animals:Animals were Holstein cows. Animal breed (IDs) involved:
     Breeds associated:
    Design:Animals were genotyped using either the Illumina BovineSNP50 v1 BeadChip or the GeneSeek Genomic Profiler Bovine HD. Genotypes were imputed from one data set to the other; a total of 85,485 SNPs were used for GWAS. Three target regions were fine-mapped using imputed sequence variants.
    Analysis:Single-locus regression was performed using a linear mixed model.
    Software:ASReml, Beagle, MINIMAC2
    Notes: 
    Links:Edit
     Reference
    Authors:Tenghe A M M, Bouwman A C, Berglund B, Strandberg E, de Koning D J, Veerkamp R F
    Affiliation:Animal Breeding and Genomics Centre, Wageningen UR Livestock Research, PO Box 338, 6700 AH Wageningen, the Netherlands; Animal Breeding and Genomics Centre, Wageningen University, PO Box 338, 6700 AH Wageningen, the Netherlands
    Title:Genome-wide association study for endocrine fertility traits using single nucleotide polymorphism arrays and sequence variants in dairy cattle
    Journal:Journal of dairy science, 2016, 99(7): 5470-85
    Links:  PubMed  |  Abstract   |  List all QTL   |  Edit  

     Additional Information
    Comments:Interval from commencement of luteal activity to first service
    User inputs on reference #27157577
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