| QTL Map Information |
|---|
| Chromosome: | 10 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
55.4-55.4 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs43634842 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 5.81E-5 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were South African Nguni cattle. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina BovineSNP50 BeadChip and analyzed for tick resistance traits. A total of 40,436 SNPs were used for analysis. |
| Analysis: | Association analysis was conducted by fitting either single SNPs or SNP regions. Mixed models were used. |
| Software: | GenABEL in R, ASReml, SAS |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Mapholi N O, Maiwashe A, Matika O, Riggio V, Bishop S C, MacNeil M D, Banga C, Taylor J F, Dzama K |
| Affiliation: | Department of Animal Sciences, University of Stellenbosch, Private Bag X1, Matieland 7602, South Africa |
| Title: | Genome-wide association study of tick resistance in South African Nguni cattle |
| Journal: | Ticks and tick-borne diseases, 2016, 7(3): 487-97 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Total tick count on tail |
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