QTL #101146 Description:

 Trait Information
Trait name: Tick resistance Vertebrate Trait Ontology: Response to parasitic infection trait
Reported name: Product Trait Ontology: n/a
Symbol: TICKR Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:26
QTL Peak Location:n/a
QTL Span:n/a
25.7-25.7 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs42097850
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Analysis type:Association
Model tested:Mendelian
Test base:Comparison-wise
Threshold significance level:Significant
VARIANCEn/a
P_values5.85E-5
LOD_scoren/a
LS_meann/a
Dominance effect:n/a
Additive effect:n/a
Associated Gene: ()
Links:   Edit  |   Map view
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  •  QTL Experiment in Brief
    Animals:Animals were South African Nguni cattle.
     Breeds associated:
    Design:Animals were genotyped using the Illumina BovineSNP50 BeadChip and analyzed for tick resistance traits. A total of 40,436 SNPs were used for analysis.
    Analysis:Association analysis was conducted by fitting either single SNPs or SNP regions. Mixed models were used.
    Software:GenABEL in R, ASReml, SAS
    Notes: 
    Links:Edit
     Reference
    Authors:Mapholi N O, Maiwashe A, Matika O, Riggio V, Bishop S C, MacNeil M D, Banga C, Taylor J F, Dzama K
    Affiliation:Department of Animal Sciences, University of Stellenbosch, Private Bag X1, Matieland 7602, South Africa
    Title:Genome-wide association study of tick resistance in South African Nguni cattle
    Journal:Ticks and tick-borne diseases, 2016, 7(3): 487-97
    Links:  PubMed  |  Abstract   |  List all QTL   |  Edit  

     Additional Information
    Comments:Total tick count on head
    User inputs on reference #26897394
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