Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of milk composition - other traits:
29
Number of QTL / associations found:
2,708
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are milk composition - other traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
2390.87368
29
9e-41
1.227273e-40
Chromosome 1
2472.86190
29
9e-41
1.227273e-40
Chromosome 2
21840.55685
29
9e-41
1.227273e-40
Chromosome 3
159.28714
29
6.204048e-20
7.755060e-20
Chromosome 4
1541.41351
29
8.007738e-307
2.402321e-305
Chromosome 5
7.19780
29
0.9999877
9.999877e-01
Chromosome 6
73016.60397
29
9e-41
1.227273e-40
Chromosome 7
173.91590
29
1.330665e-22
1.735650e-22
Chromosome 8
422.55755
29
1.965208e-71
4.211160e-71
Chromosome 9
377.23693
29
2.971831e-62
5.943662e-62
Chromosome 10
107.19850
29
6.682283e-11
7.710327e-11
Chromosome 11
151.74801
29
1.411778e-18
1.694134e-18
Chromosome 12
74.87887
29
6.337379e-06
6.790049e-06
Chromosome 13
95.78294
29
4.573454e-09
5.081616e-09
Chromosome 14
21175.57003
29
9e-41
1.227273e-40
Chromosome 15
811.76597
29
3.907113e-152
1.302371e-151
Chromosome 16
877.64759
29
5.523766e-166
2.367328e-165
Chromosome 17
687.71267
29
3.631236e-126
9.903371e-126
Chromosome 18
1410.78504
29
5.631835e-279
5.631835e-278
Chromosome 19
844.38546
29
5.483194e-159
2.056198e-158
Chromosome 20
658.30580
29
4.900524e-120
1.225131e-119
Chromosome 21
1285.93946
29
2.080174e-252
1.560131e-251
Chromosome 22
1631.71197
29
9e-41
1.227273e-40
Chromosome 23
1631.71197
29
9e-41
1.227273e-40
Chromosome 24
629.54128
29
4.734517e-114
1.092581e-113
Chromosome 25
2.40033
29
0.998329325823115
9.999877e-01
Chromosome 26
1453.68532
29
4.077108e-288
6.115662e-287
Chromosome 27
981.28953
29
7.756515e-188
3.878258e-187
Chromosome 28
748.45404
29
7.3289e-139
2.198670e-138
Chromosome 29
1017.12193
29
2.082586e-195
1.249552e-194
Chi-squared (χ2) test: Which of the 29 milk composition - other traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Milk acetone content
69.9597
28
1.885302e-05
2.877566e-05
Milk acidity/alkalinity
65.94267
28
6.726597e-05
9.289110e-05
Milk beta-hydroxybutyrate content
97.08869
28
1.493496e-09
2.547728e-09
Milk calcium content
300.51037
28
1.94317e-47
6.261326e-47
Milk cholesterol content
128.1601
28
9.118332e-15
1.888797e-14
Milk citrate content
64.20421
28
0.0001151228
1.451548e-04
Milk copper content
66.43857
28
5.762026e-05
8.354938e-05
Milk energy yield
65.56143
28
7.57319e-05
9.982841e-05
Milk glycerophosphocholine content
902.22224
28
6.441773e-172
4.670285e-171
Milk glycerophosphocholine to phosphocholine ratio
730.09344
28
9.866799e-136
5.722743e-135
Milk iodine content
95.04654
28
3.168257e-09
5.104414e-09
Milk iron content
376.93085
28
9.227765e-63
3.345065e-62
Milk lactose content
193.93493
28
9.575452e-27
2.776881e-26
Milk lactose yield
60.73575
28
0.0003277507
3.801908e-04
Milk magnesium content
152.07475
28
5.206206e-19
1.161384e-18
Milk manganese content
190.42856
28
4.372736e-26
1.152812e-25
Milk mid-infrared spectra
115.49526
28
1.362347e-12
2.633871e-12
Milk phosphocholine level
62.04746
28
0.0002215781
2.677402e-04
Milk phosphorus content
1258.53727
28
2.049954e-247
5.944867e-246
Milk potassium content
1188.88757
28
1.303439e-232
1.259991e-231
Milk riboflavin content
551.8105
28
1.356286e-98
6.555382e-98
Milk selenium content
424.23205
28
2.278674e-72
9.440221e-72
Milk sodium content
56.01257
28
0.001281831
1.429735e-03
Milk solids percentage
110.76155
28
8.532076e-12
1.546439e-11
Milk solids yield
27.94098
28
0.4675786
4.842778e-01
Milk vitamin B-12 content
163.77128
28
3.880328e-21
9.377459e-21
Milk zinc content
1229.56196
28
2.96732e-241
4.302614e-240
Non-fat milk solids
33.07982
28
0.2328177
2.500635e-01
Non-fat milk solids percentage
6.80404
28
0.9999863
9.999863e-01
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
138680.141940
Number of traits:
29
df
=
812
Number of QTLs:
2,708
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
