Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of organ disorders traits:
4
Number of QTL / associations found:
1,629
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are organ disorders traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
131.80772
29
4.652202e-15
7.345582e-15
Chromosome 1
151.16684
29
1.793977e-18
3.165842e-18
Chromosome 2
72.16868
29
1.52247e-05
1.631218e-05
Chromosome 3
151.16684
29
1.793977e-18
3.165842e-18
Chromosome 4
97.06740
29
2.866399e-09
3.184888e-09
Chromosome 5
157.91456
29
1.098326e-19
2.196652e-19
Chromosome 6
81944.16868
29
9e-41
1.350000e-39
Chromosome 7
164.80956
29
6.172471e-21
1.424416e-20
Chromosome 8
108.05820
29
4.830396e-11
6.300517e-11
Chromosome 9
179.04164
29
1.510487e-23
5.034957e-23
Chromosome 10
58.99744
29
0.0008217659
8.501027e-04
Chromosome 11
125.64936
29
5.36607e-14
7.665814e-14
Chromosome 12
1855.29944
29
9e-41
1.350000e-39
Chromosome 13
125.64936
29
5.36607e-14
7.665814e-14
Chromosome 14
47.15212
29
0.01796521
1.796521e-02
Chromosome 15
171.85192
29
3.185591e-22
7.963978e-22
Chromosome 16
119.63832
29
5.665518e-13
7.725706e-13
Chromosome 17
102.48912
29
3.894994e-10
4.673993e-10
Chromosome 18
171.85192
29
3.185591e-22
7.963978e-22
Chromosome 19
157.91456
29
1.098326e-19
2.196652e-19
Chromosome 20
102.48912
29
3.894994e-10
4.673993e-10
Chromosome 21
171.85192
29
3.185591e-22
7.963978e-22
Chromosome 22
201.49464
29
9.725479e-28
5.835287e-27
Chromosome 23
97.06740
29
2.866399e-09
3.184888e-09
Chromosome 24
131.80772
29
4.652202e-15
7.345582e-15
Chromosome 25
186.37864
29
6.583207e-25
2.468703e-24
Chromosome 26
186.37864
29
6.583207e-25
2.468703e-24
Chromosome 27
209.27368
29
3.298944e-29
2.474208e-28
Chromosome 28
193.86300
29
2.63821e-26
1.319105e-25
Chromosome 29
209.27368
29
3.298944e-29
2.474208e-28
Chi-squared (χ2) test: Which of the 4 organ disorders traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Abomasum displacement
265.04056
3
3.650895e-57
3.650895e-57
Bilateral convergent strabismus with exophthalmus
1307.22443
3
3.983536e-283
1.593414e-282
Intestinal atresia
621.97018
3
1.739454e-134
3.478908e-134
Liver abscess
434.52216
3
7.356206e-94
9.808275e-94
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
87783.742120
Number of traits:
4
df
=
87
Number of QTLs:
1,629
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
