Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of fertility traits:
38
Number of QTL / associations found:
34,252
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are fertility traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
4124640.65456
29
9e-41
9.000000e-41
Chromosome 1
8921.36222
29
9e-41
9.000000e-41
Chromosome 2
3030.15952
29
9e-41
9.000000e-41
Chromosome 3
1585.60054
29
9e-41
9.000000e-41
Chromosome 4
159229.07972
29
9e-41
9.000000e-41
Chromosome 5
7343.81426
29
9e-41
9.000000e-41
Chromosome 6
5412.57066
29
9e-41
9.000000e-41
Chromosome 7
13115.03044
29
9e-41
9.000000e-41
Chromosome 8
21500.21874
29
9e-41
9.000000e-41
Chromosome 9
20391.37798
29
9e-41
9.000000e-41
Chromosome 10
18558.80442
29
9e-41
9.000000e-41
Chromosome 11
14795.28214
29
9e-41
9.000000e-41
Chromosome 12
25699.99964
29
9e-41
9.000000e-41
Chromosome 13
14050.41678
29
9e-41
9.000000e-41
Chromosome 14
13073.27832
29
9e-41
9.000000e-41
Chromosome 15
24258.46926
29
9e-41
9.000000e-41
Chromosome 16
22201.35484
29
9e-41
9.000000e-41
Chromosome 17
100566.12600
29
9e-41
9.000000e-41
Chromosome 18
7982.48748
29
9e-41
9.000000e-41
Chromosome 19
11224.64026
29
9e-41
9.000000e-41
Chromosome 20
24201.67332
29
9e-41
9.000000e-41
Chromosome 21
65913.09684
29
9e-41
9.000000e-41
Chromosome 22
28031.86090
29
9e-41
9.000000e-41
Chromosome 23
26111.08364
29
9e-41
9.000000e-41
Chromosome 24
31040.83238
29
9e-41
9.000000e-41
Chromosome 25
477.14358
29
1.409813e-82
4.229439e-81
Chromosome 26
24657.90398
29
9e-41
9.000000e-41
Chromosome 27
31622.08874
29
9e-41
9.000000e-41
Chromosome 28
32077.90444
29
9e-41
9.000000e-41
Chromosome 29
17002.27312
29
9e-41
9.000000e-41
Chi-squared (χ2) test: Which of the 38 fertility traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Age at first calving
1292.77795
37
1.980116e-247
3.762220e-246
Age at first conception
148.27226
37
2.934922e-15
3.845760e-15
Age at puberty
16869.29336
37
9e-41
1.486957e-40
Age at second calving
146.60755
37
5.555608e-15
7.037103e-15
Antral follicle number
121.25787
37
6.830927e-11
7.416435e-11
Calving ability
1030.67485
37
3.109488e-192
3.938685e-191
Calving ease
9573.98734
37
9e-41
1.486957e-40
Calving interval
372.51502
37
5.049875e-57
2.398691e-56
Calving to conception interval
12352.717
37
9e-41
1.486957e-40
Conception rate
2413.75234
37
9e-41
1.486957e-40
Dystocia
225.50123
37
6.947942e-29
1.015468e-28
Early embryonic survival
300.76546
37
4.657917e-43
1.770008e-42
Fertility index
415.06297
37
1.912284e-65
1.453336e-64
Fertility treatments
101.61542
37
6.161579e-08
6.328108e-08
Fertilization rate
238.50592
37
2.753111e-31
4.184729e-31
First service conception
1016.40349
37
3.061378e-189
2.908309e-188
Gestation length
3900.64922
37
9e-41
1.486957e-40
Heat intensity
81.92502
37
3.028911e-05
3.028911e-05
Heifer pregnancy
379.69827
37
1.939889e-58
1.053083e-57
Inseminations per conception
9289.1828
37
9e-41
1.486957e-40
Interval from first to last insemination
9858.1136
37
9e-41
1.486957e-40
Interval to first estrus after calving
6172.10452
37
9e-41
1.486957e-40
Luteal activity
19177.23531
37
9e-41
1.486957e-40
Male fertility
132.67276
37
1.060320e-12
1.220975e-12
Non-return rate
23489.11599
37
9e-41
1.486957e-40
Number of degenerate embryos
108.88567
37
5.276107e-09
5.569224e-09
Number of embryos
381.25467
37
9.56579e-59
6.058334e-58
Number of transferable embryos
336.45596
37
5.813279e-50
2.454496e-49
Number of unfertilized ova
163.5416
37
7.673428e-18
1.041394e-17
Offspring number
2177.39785
37
9e-41
1.486957e-40
Ovulation rate
135.03939
37
4.398703e-13
5.223460e-13
Pregnancy loss
141.78154
37
3.489372e-14
4.277295e-14
Pregnancy rate
1473.1749
37
1.304065e-285
4.955447e-284
Reproductive efficiency
217.43204
37
2.089359e-27
2.940579e-27
Sexual precocity
2487.53724
37
9e-41
1.486957e-40
Stayability
131.79461
37
1.467702e-12
1.640373e-12
Stillbirth
2157.96129
37
9e-41
1.486957e-40
Total number of ova
254.54445
37
2.799936e-34
4.433232e-34
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
4898716.588720
Number of traits:
38
df
=
1073
Number of QTLs:
34,252
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
