Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of milk composition - protein traits:
37
Number of QTL / associations found:
26,169
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are milk composition - protein traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
22746.46521
29
9e-41
9.310345e-41
Chromosome 1
308.62699
29
1.592042e-48
2.388063e-47
Chromosome 2
3099.04526
29
9e-41
9.310345e-41
Chromosome 3
1089.94082
29
8.143258e-211
2.442977e-209
Chromosome 4
19573.07585
29
9e-41
9.310345e-41
Chromosome 5
149.15773
29
4.100820e-18
4.100820e-18
Chromosome 6
2189541.23740
29
9e-41
9.310345e-41
Chromosome 7
7564.46130
29
9e-41
9.310345e-41
Chromosome 8
14780.23756
29
9e-41
9.310345e-41
Chromosome 9
15082.22675
29
9e-41
9.310345e-41
Chromosome 10
7245.47172
29
9e-41
9.310345e-41
Chromosome 11
43243.47287
29
9e-41
9.310345e-41
Chromosome 12
18774.60882
29
9e-41
9.310345e-41
Chromosome 13
4057.84735
29
9e-41
9.310345e-41
Chromosome 14
340358.82566
29
9e-41
9.310345e-41
Chromosome 15
3850.65068
29
9e-41
9.310345e-41
Chromosome 16
3901.94082
29
9e-41
9.310345e-41
Chromosome 17
14234.52271
29
9e-41
9.310345e-41
Chromosome 18
17227.55668
29
9e-41
9.310345e-41
Chromosome 19
10280.05706
29
9e-41
9.310345e-41
Chromosome 20
94510.68656
29
9e-41
9.310345e-41
Chromosome 21
18270.08903
29
9e-41
9.310345e-41
Chromosome 22
16426.13742
29
9e-41
9.310345e-41
Chromosome 23
3723.90977
29
9e-41
9.310345e-41
Chromosome 24
18214.45509
29
9e-41
9.310345e-41
Chromosome 25
17662.78509
29
9e-41
9.310345e-41
Chromosome 26
14087.47287
29
9e-41
9.310345e-41
Chromosome 27
27712.83831
29
9e-41
9.310345e-41
Chromosome 28
23942.12132
29
9e-41
9.310345e-41
Chromosome 29
1893.80319
29
9e-41
9.310345e-41
Chi-squared (χ2) test: Which of the 37 milk composition - protein traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Milk alpha-S1-casein content
67.86578
36
0.001031775
1.908784e-03
Milk alpha-S1-casein percentage
155.21311
36
9.518274e-17
2.071624e-16
Milk alpha-S2-casein percentage
227.6786
36
1.085405e-29
3.089230e-29
Milk alpha-casein content
40.14524
36
0.2915427
3.595693e-01
Milk alpha-casein percentage
41.89762
36
0.2302572
2.937764e-01
Milk alpha-casein to beta-casein ratio
4.49596
36
1
1.000000e+00
Milk alpha-lactalbumin content
8.48403
36
0.9999994
1.000000e+00
Milk alpha-lactalbumin percentage
185.32608
36
5.371188e-22
1.242087e-21
Milk beta-casein content
12.54561
36
0.9999016
1.000000e+00
Milk beta-casein percentage
474.15623
36
7.807877e-78
1.444457e-76
Milk beta-lactoglobulin percentage
2286.43725
36
9e-41
2.775000e-40
Milk beta-lactoglobulin protein content
2374.49947
36
9e-41
2.775000e-40
Milk casein content
62.27717
36
0.004227546
6.800835e-03
Milk casein index
153.83674
36
1.631997e-16
3.354660e-16
Milk casein percentage
828.70021
36
1.028873e-150
3.806830e-149
Milk casein yield
62.83414
36
0.003691459
6.208363e-03
Milk delta-9-desaturase content
297.73904
36
6.10468e-43
5.646829e-42
Milk energy yield
60.37521
36
0.006658116
9.854012e-03
Milk glycosylated kappa-casein percentage
1998.9229
36
9e-41
2.775000e-40
Milk immunoglobulin G content
35.7542
36
0.4801886
5.731283e-01
Milk kappa-casein content
47.77022
36
0.09073227
1.198962e-01
Milk kappa-casein percentage
2810.37493
36
9e-41
2.775000e-40
Milk lactoferrin content
2280.87197
36
9e-41
2.775000e-40
Milk lactoperoxidase content
54.63894
36
0.02396222
3.410008e-02
Milk osteopontin content
4.49596
36
1
1.000000e+00
Milk phosphorylated alpha-S2-casein percentage
445.19205
36
5.233978e-72
6.455240e-71
Milk protein content
61.41537
36
0.00520254
8.020583e-03
Milk protein percentage
5435.69922
36
9e-41
2.775000e-40
Milk protein yield
2285.01035
36
9e-41
2.775000e-40
Milk protein yield persistency
49.60945
36
0.06505392
8.914796e-02
Milk protein-to-fat ratio
82.58155
36
1.605177e-05
3.125871e-05
Milk unglycosylated kappa-casein percentage
2089.96035
36
9e-41
2.775000e-40
Milk urea nitrogen content
202.16953
36
5.093153e-25
1.256311e-24
Milk urea nitrogen yield
225.68598
36
2.535372e-29
6.700626e-29
Milk whey protein content
64.52445
36
0.002429251
4.280109e-03
Milk whey protein percentage
22.10205
36
0.9665815
1.000000e+00
Milk whey protein yield
2.24798
36
1
1.000000e+00
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
2973553.727890
Number of traits:
37
df
=
1044
Number of QTLs:
26,169
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
