GAP of: ocops.ge_om check: 4017 from: 1 to: 1198
LOCUS OCU21688 1198 bp mRNA MAM 08-MAR-1996
DEFINITION Oryctolagus cuniculus rhodopsin mRNA, complete cds.
ACCESSION U21688
NID g710429
KEYWORDS .
SOURCE rabbit. . . .
to: rnops.ge_ro check: 6230 from: 1 to: 1493
LOCUS RNOPS 1493 bp RNA ROD 20-DEC-1994
DEFINITION R.norvegicus mRNA for rhodopsin.
ACCESSION Z46957
NID g603874
KEYWORDS rhodopsin.
SOURCE Norway rat. . . .
Symbol comparison table: /usr/prog/gcg/gcgcore/data/rundata/nwsgapdna.cmp
CompCheck: 6876
Gap Weight: 5.000 Average Match: 1.000
Length Weight: 0.300 Average Mismatch: 0.000
Quality: 1004.7 Length: 1502
Ratio: 0.839 Gaps: 5
Percent Similarity: 86.880 Percent Identity: 86.880
ocops.ge_la x rnops.ge_ro September 24, 1996 13:46 ..
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1 .....................AAGGCCGCAG.CATGAACGGAACGGAGGG 28
| |||||||| ||||||||| || |||||
51 ACAGCCCGTGGGGCAGCCTCAAGGGCCGCAGCCATGAACGGCACAGAGGG 100
. . . . .
29 CCCGGACTTCTACATACCCATGTCCAACCAGACAGGCGTGGTGCGCAGCC 78
||| | || || | ||| | |||||| || ||||||||||||||||
101 CCCCAATTTTTATGTGCCCTTCTCCAACATCACGGGCGTGGTGCGCAGCC 150
. . . . .
79 CCTTCGAGTACCCGCAGTACTACCTGGCCGAGCCCTGGCAGTTCTCCATG 128
|||| ||| | ||||||||||||||||| ||||| |||||||||||||||
151 CCTTTGAGCAGCCGCAGTACTACCTGGCGGAGCCATGGCAGTTCTCCATG 200
. . . . .
129 CTGGCCGCCTACATGTTCCTGCTCATCGTGCTCGGCTTCCCCATCAACTT 178
||||| |||||||||||||||||||||||||| |||||||||||||||||
201 CTGGCAGCCTACATGTTCCTGCTCATCGTGCTGGGCTTCCCCATCAACTT 250
. . . . .
179 CCTCACGCTCTACGTCACCGTGCAGCACAAGAAGCTGCGCACGCCCCTCA 228
||||||||||||||||||||| |||||||||||||||||||| || ||||
251 CCTCACGCTCTACGTCACCGTACAGCACAAGAAGCTGCGCACACCACTCA 300
. . . . .
229 ACTACATCCTGCTCAACCTGGCTGTGGCTGACCTCTTCATGGTCCTTGGG 278
||||||||||||||||| |||||||||||||||||||||||||| | ||
301 ACTACATCCTGCTCAACTTGGCTGTGGCTGACCTCTTCATGGTCTTCGGA 350
. . . . .
279 GGCTTCACCACCACCCTGTACACCTCCCTGCATGGCTACTTCGTCTTCGG 328
|| |||||||||||||| |||||||| |||||||||||||| ||||| ||
351 GGATTCACCACCACCCTCTACACCTCACTGCATGGCTACTTTGTCTTTGG 400
. . . . .
329 GCCCACGGGATGCAACGTGGAGGGCTTCTTTGCCACGCTGGGCGGTGAAA 378
|||||| || |||||| | ||||||||||||||||| || || |||||||
401 GCCCACAGGCTGCAACCTTGAGGGCTTCTTTGCCACCCTTGGAGGTGAAA 450
. . . . .
379 TTGCGCTGTGGTCCCTGGTGGTCCTGGCCATCGAGCGGTACGTGGTGGTG 428
| | |||||||||||||| ||||||||||| ||||| |||||||||||
451 TCGGCCTGTGGTCCCTGGTAGTCCTGGCCATTGAGCGCTACGTGGTGGTC 500
. . . . .
429 TGCAAGCCCATGAGCAACTTCCGCTTCGGCGAGAACCACGCCATCATGGG 478
|||||||||||||||||||||||||| || ||||| || ||||| |||||
501 TGCAAGCCCATGAGCAACTTCCGCTTTGGGGAGAATCATGCCATTATGGG 550
. . . . .
479 TGTTGCCTTCACCTGGATCATGGCCCTGGCCTGTGCCGCGCCGCCCCTCG 528
||| |||||||||||| ||||||| |||||||||| || || || || |
551 TGTGGCCTTCACCTGGGTCATGGCGTTGGCCTGTGCTGCTCCCCCACTGG 600
. . . . .
529 TCGGCTGGTCCAGGTACATCCCTGAGGGCATGCAGTGCTCGTGCGGAATC 578
| |||||||||||||||||||| |||||||||||||| || || || ||
601 TTGGCTGGTCCAGGTACATCCCCGAGGGCATGCAGTGTTCATGTGGGATT 650
. . . . .
579 GACTACTACACGCTCAAGCCCGAGGTCAACAACGAGTCGTTCGTCATCTA 628
|||||||| || |||||||| ||||||||||| ||||| |||||||||||
651 GACTACTATACACTCAAGCCTGAGGTCAACAATGAGTCCTTCGTCATCTA 700
. . . . .
629 TATGTTCGTGGTCCACTTCACCATCCCTTTGATCATCATCTTCTTCTGCT 678
|||||||||||||||||||||||||| ||||| |||||||||||||||
701 CATGTTCGTGGTCCACTTCACCATCCCCATGATCGTCATCTTCTTCTGCT 750
. . . . .
679 ACGGGCAGCTCGTCTTTACTGTCAAGGAGGCAGCTGCCCAGCAGCAGGAG 728
|||||||||| ||||| || ||||||||||| || |||||||| ||||||
751 ACGGGCAGCTGGTCTTCACCGTCAAGGAGGCCGCCGCCCAGCAACAGGAG 800
. . . . .
729 TCGGCCACCACGCAGAAGGCAGAGAAGGAAGTGACCCGCATGGTCATCAT 778
||||| ||||| |||||||||||||||||||| || ||||||||||||||
801 TCGGCTACCACTCAGAAGGCAGAGAAGGAAGTCACGCGCATGGTCATCAT 850
. . . . .
779 CATGGTCATCGCCTTCCTGATCTGCTGGGTGCCCTACGCCAGCGTGGCGT 828
|||||||||| |||||||||||||||| | ||||| ||||| |||||
851 CATGGTCATCTTCTTCCTGATCTGCTGGCTTCCCTATGCCAGTGTGGCCA 900
. . . . .
829 TCTACATCTTCACCCACCAGGGCTCCAACTTCGGGCCCATCTTCATGACC 878
| |||||||| ||||||||||||||||||||||| |||||||||||||||
901 TGTACATCTTTACCCACCAGGGCTCCAACTTCGGCCCCATCTTCATGACC 950
. . . . .
879 ATCCCGGCGTTCTTCGCCAAGAGCTCCTCCATCTACAACCCTGTCATCTA 928
| || || ||||| || |||| | |||||||||||||||| |||||||
951 CTTCCCGCTTTCTTTGCTAAGACCGCCTCCATCTACAACCCAATCATCTA 1000
. . . . .
929 CATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACCACCATCTGCT 978
|||||||||||||||||||||||||||||||||||||||||| ||||||
1001 CATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACCACGCTCTGCT 1050
. . . . .
979 GCGGCAAGAACCCACTGGGTGACGACGAGGCCTCTGCCACGGCTTCCAAG 1028
|||||||||| |||||||| || || |||||||||||||| || ||||||
1051 GCGGCAAGAATCCACTGGGAGATGATGAGGCCTCTGCCACTGCCTCCAAG 1100
. . . . .
1029 ACGGAGACCAGCCAGGTGGCCCCGGCCTAAGCACTGCCAGGGACTCCGTG 1078
|||||||||||||||||||| || |||||||| ||||| |||| |||
1101 ACGGAGACCAGCCAGGTGGCTCCAGCCTAAGCCTGGCCAGAGACT..GTG 1148
. . . . .
1079 GCCGACTGTAGGAGTCTCCCATCCCTCACACCCCACCCCCAGCCACAGCC 1128
|| |||||||||||||||| |||| | | |||||||||||||
1149 GCTGACTGTAGGAGTCTCCTGTCCC.....CACTCACCCCAGCCACAGC. 1192
. . . . .
1129 ACCCCACCAGGAGCCGCGCCTGTCAGAACCAAG.CTTGCAGGCTCCGTGA 1177
||||||||||||| || || || ||| | | | |||||||||| | |
1193 .CCCCACCAGGAGCAGCACCCGTTGGAATGAGGTCATGCAGGCTCCCTCA 1241
. . . . .
1178 GAGGGTTGTTTTCCCCTAAAG............................. 1198
| | | || | |
1242 GTGTTCTTTTCTTTGTTTTTAATGAATTCATGAAAGCAAAATGAGGCTCC 1291
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