chromosome 2

50400 bytes allocated in orders_morecore

3024000 bytes allocated in morecore

Option chosen: flips4

Current values for parameters:

par_file = chr2.par
dat_file = chr2.dat
gen_file = chr2.gen
ord_file = chr2.ord
nb_our_alloc = 3000000    [# bytes reserved for our_alloc]
SEX_EQ = 1   [0 = sex specific analysis, 1 = sex equal]
TOL = 0.010000
PUK_NUM_ORDERS_TOL = 6
PK_NUM_ORDERS_TOL = 8
PUK_LIKE_TOL = 3.000
PK_LIKE_TOL = 3.000
use_ord_file = 0
write_ord_file = 0
use_haps = 1



Haplotyped system (distances forced to 0.0):

  0   CRYG1-5               2   CRYG1-5_2             4   CRYG1-5_3           


Haplotyped system (distances forced to 0.0):

  1   D2S54                 3   D2S54_2             

Haplotyped system (distances forced to 0.0):

 23   D2S38                24   D2S38_2             

Haplotyped system (distances forced to 0.0):

 40   D2S5_2               39   D2S5                

Haplotyped system (distances forced to 0.0):

 42   D2S1_2               41   D2S1                

Haplotyped system (distances forced to 0.0):

 44   TPO                  45   TPO_2               

Haplotyped system (distances forced to 0.0):

 54   APOB_2               53   APOB                

Haplotyped system (distances forced to 0.0):

 63   D2S61                64   D2S61_2             

Haplotyped system (distances forced to 0.0):

 75   TGFA_3               73   TGFA_2               72   TGFA                
 76   TGFA_4              

N.B. Only the first locus in each set is retained in the orders
objects, but the remaining loci are used in all likelihood calculations.



 55   D2S51               
 68   D2S44               
  1   D2S54               
 69   D2S43               
 33   D2S62               
 59   D2S45               
 40   D2S5_2              
 66   D2S6                
 56   D2S48               
 54   APOB_2              
 50   D2S70               
 65   D2S47               



number of loci to flip = 4


Original order, & its log10_likelihood,  followed by
flipped orders, with their relative log10_likelihoods 
(= log10_like[orig] - log10_like[curr])

 55 68  1 69 33 59 40 66 56 54 50 65   -578.59

  -  -  -  -  -  -  -  -  - 50 54  -      1.46